RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 SPANXN4Q5MJ08 99 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 LGSNQ5TDP6 509 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 HES3Q5TGS1 186 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 ZNF691Q5VV52 312 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 TMEM236Q5W0B7 351 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 GUSBP11Q6P575 273 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 TBPL2Q6SJ96 375 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 DHRS11Q6UWP2 260 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 TMEM107Q6UX40 140 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 EIF3MQ7L2H7 374 aaKnown RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 P4HA3Q7Z4N8 544 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 VTCN1Q7Z7D3 282 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 LHFPL4Q7Z7J7 247 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 COMMD7Q86VX2 200 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 ZNF547Q8IVP9 402 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 DND1Q8IYX4 353 aaKnown RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 TBC1D19Q8N5T2 526 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 DNAAF3Q8N9W5 541 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 OR1M1Q8NGA1 313 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 OR5AU1Q8NGC0 362 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 OR56A4Q8NGH8 313 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 OR52E4Q8NGH9 312 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 OR5D13Q8NGL4 314 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 M1APQ8TC57 530 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 FAM110BQ8TC76 370 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 LMX1AQ8TE12 382 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 SFT2D1Q8WV19 159 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 PATE1Q8WXA2 126 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 HTR3CQ8WXA8 447 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 SLC38A4Q969I6 547 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 TMBIM1Q969X1 311 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 CPNE4Q96A23 557 aaPredicted RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 ROPN1LQ96C74 230 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 AKR1E2Q96JD6 320 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 C7orf34Q96L11 122 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 CXorf58Q96LI9 332 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 PPP3R2Q96LZ3 170 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 LINC00052Q96N35 136 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 PPP1R2P1Q96PQ5 205 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 MBOAT4Q96T53 435 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 VAT1Q99536 393 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 CCM2Q9BSQ5 444 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 RIOK2Q9BVS4 552 aaKnown RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 SRRQ9GZT4 340 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 MAGT1Q9H0U3 335 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 DCSTAMPQ9H295 470 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 SLC26A1Q9H2B4 701 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 MIXL1Q9H2W2 232 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 PIGUQ9H490 435 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 FNDC4Q9H6D8 234 aaPredicted RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 RANBP3Q9H6Z4 567 aaPredicted RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 JPT2Q9H910 190 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 RNF122Q9H9V4 155 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 CALHM2Q9HA72 323 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 ELOVL3Q9HB03 270 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 MRPS30Q9NP92 439 aaKnown RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 BIN3Q9NQY0 253 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 ZC4H2Q9NQZ6 224 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 NANSQ9NR45 359 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 EXD2Q9NVH0 621 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 MRPL22Q9NWU5 206 aaKnown RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 CMTM6Q9NX76 183 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 PLEK2Q9NYT0 353 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 TREM2Q9NZC2 230 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 IL17CQ9P0M4 197 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 PIPOXQ9P0Z9 390 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 PEF1Q9UBV8 284 aaKnown RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 NUFIP1Q9UHK0 495 aaKnown RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 PDE10AQ9Y233 779 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 CBY1Q9Y3M2 126 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 ETV7Q9Y603 341 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 NCKAP5O14513 1909 aa2.71□□□□□ -1.98
USP48-215ENST00000534705 TLN1Q9Y490 2541 aaKnown RBP2.71□□□□□ -1.98
USP48-215ENST00000534705 ARHGAP21Q5T5U3 1957 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 SVILO95425 2214 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 NUP214P35658 2090 aaPredicted RBP2.7□□□□□ -1.98
USP48-215ENST00000534705 PRRC2CQ9Y520 2896 aaKnown RBP2.7□□□□□ -1.98
USP48-215ENST00000534705 TRBV5-4A0A0C4DH59 114 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 LOC100506127A0A0U1RQW1 187 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 DHRS12A0PJE2 317 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 RNF222A6NCQ9 220 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 METTL21EPA6NDL7 271 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 OR6C70A6NIJ9 312 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 SRRM5B3KS81 715 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 C9JVG2 144 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 SULT1C2O00338 296 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 NME4O00746 187 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 SDHDO14521 159 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 CCSO14618 274 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 INPP4BO15327 924 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 SLC31A2O15432 143 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 NUPL2O15504 423 aaKnown RBP2.7□□□□□ -1.98
USP48-215ENST00000534705 CFLARO15519 480 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 HCN1O60741 890 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 BANF1O75531 89 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 LYPLA1O75608 230 aaPredicted RBP2.7□□□□□ -1.98
USP48-215ENST00000534705 KRTAP5-8O75690 187 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 CLIC3O95833 236 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 CSTAP01040 98 aa2.7□□□□□ -1.98
USP48-215ENST00000534705 TNFP01375 233 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms