RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	SLC2A6	Q9UGQ3	507 aa		3.3	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TAC3	Q9UHF0	121 aa		3.3	□□□□□ -1.88
ECHDC1-223	ENST00000534442	CLEC4A	Q9UMR7	237 aa		3.3	□□□□□ -1.88
ECHDC1-223	ENST00000534442	USH1C	Q9Y6N9	552 aa		3.3	□□□□□ -1.88
ECHDC1-223	ENST00000534442	LOC285095	A0A1B0GVY8	99 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	METTL21EP	A6NDL7	271 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	OR6C65	A6NJZ3	312 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	FAM220BP	B1ANY3	271 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	KCNK1	O00180	336 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ARPC3	O15145	178 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	MFSD11	O43934	449 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	C1orf105	O95561	183 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	CA1	P00915	261 aa	Predicted RBP	3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	IFNA6	P05013	189 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	CALB1	P05937	261 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	HPCAL1	P37235	193 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ZNF83	P51522	516 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	STX17	P56962	302 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	RND3	P61587	244 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	BDH1	Q02338	343 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PAX2	Q02962	417 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ST3GAL3	Q11203	375 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	RIPK1	Q13546	671 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	LAGE3	Q14657	143 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	GANAB	Q14697	944 aa	Known RBP	3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	CCSMST1	Q4G0I0	132 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	AVPI1	Q5T686	147 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	DNAJC24	Q6P3W2	148 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	FAM173B	Q6P4H8	233 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TFAP2E	Q6VUC0	442 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TAS2R42	Q7RTR8	314 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	LCA5	Q86VQ0	697 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	C11orf42	Q8N5U0	333 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	POM121L12	Q8N7R1	296 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	EIF1AD	Q8N9N8	165 aa	Known RBP	3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	LINC00301	Q8NCQ3	95 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	OR2T33	Q8NG76	320 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PIGC	Q92535	297 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PELI1	Q96FA3	418 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SDSL	Q96GA7	329 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SH3YL1	Q96HL8	342 aa	Predicted RBP	3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	DNAJC1	Q96KC8	554 aa	Known RBP	3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PRAP1	Q96NZ9	151 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	RHBG	Q9H310	441 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PRTFDC1	Q9NRG1	225 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ZNF275	Q9NSD4	429 aa	Predicted RBP	3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	CLEC5A	Q9NY25	188 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SIGLEC8	Q9NYZ4	499 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ZNF221	Q9UK13	617 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ARL5A	Q9Y689	179 aa		3.29	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SYNE2	Q8WXH0	6885 aa	Known RBP	3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PPIAL4E	A0A075B759	164 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	OR5H1	A6NKK0	313 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TRIM64C	A6NLI5	447 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	RNASEK-C17orf49	H0YIS7	233 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	OR7A17	O14581	309 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	CLIC3	O95833	236 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	OR56A5	P0C7T3	313 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PPIAL4F	P0DN26	164 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ERG	P11308	486 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ZNF44	P15621	663 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ZNF17	P17021	662 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	COL8A2	P25067	703 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PTBP1	P26599	531 aa	Known RBP eCLIP	3.28	□□□□□ -1.88	5e-10	■■■■□ 20.2
ECHDC1-223	ENST00000534442	LAP3	P28838	519 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	MIP	P30301	263 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	CCR7	P32248	378 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	HSD17B2	P37059	387 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SUCLG1	P53597	346 aa	Known RBP	3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TMEM33	P57088	247 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	FBXW4	P57775	412 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ARHGAP19	Q14CB8	494 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TAF1A	Q15573	450 aa	Predicted RBP	3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SLC1A5	Q15758	541 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SLC22A6	Q4U2R8	563 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TEX44	Q53QW1	395 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	CCDC183	Q5T5S1	534 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	MEDAG	Q5VYS4	303 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	RNLS	Q5VYX0	342 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	OR8G2P	Q6IF36	304 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	GSG1L	Q6UXU4	331 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	VSTM4	Q8IW00	320 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	C9orf40	Q8IXQ3	194 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ZNF101	Q8IZC7	436 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TMEM123	Q8N131	208 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	OR4D5	Q8NGN0	318 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	ZNF721	Q8TF20	911 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SKA2	Q8WVK7	121 aa	Predicted RBP	3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TFB1M	Q8WVM0	346 aa	Known RBP	3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TOMM40L	Q969M1	308 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	YIPF5	Q969M3	257 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	SLC41A3	Q96GZ6	507 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TMEM80	Q96HE8	168 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	NABP2	Q9BQ15	211 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	MAGT1	Q9H0U3	335 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	TPK1	Q9H3S4	243 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	METTL7A	Q9H8H3	244 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	PIPOX	Q9P0Z9	390 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	LCMT1	Q9UIC8	334 aa		3.28	□□□□□ -1.88
ECHDC1-223	ENST00000534442	OARD1	Q9Y530	152 aa		3.28	□□□□□ -1.88

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