RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 LRRC75AQ8NAA5 344 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 NAT6Q93015 286 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 FAM131CQ96AQ9 280 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 ZNF707Q96C28 371 aaPredicted RBP1.55□□□□□ -2.16
CD44-238ENST00000534296 NEURL3Q96EH8 262 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 ALS2CR12Q96Q35 445 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 OR2M4Q96R27 311 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 TMEM175Q9BSA9 504 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 ULBP2Q9BZM5 246 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 WDR55Q9H6Y2 383 aaPredicted RBP1.55□□□□□ -2.16
CD44-238ENST00000534296 REEP1Q9H902 201 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 CES1P1Q9UKY3 287 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 CFL2Q9Y281 166 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 TSSC4Q9Y5U2 329 aaPredicted RBP1.55□□□□□ -2.16
CD44-238ENST00000534296 ENPP4Q9Y6X5 453 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 DOCK9Q9BZ29 2069 aa1.55□□□□□ -2.16
CD44-238ENST00000534296 SVILO95425 2214 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 IGKV1-8A0A0C4DH67 115 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 A0A0G2JMP0 313 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 A0A0X1KG70 313 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 ZNF98A6NK75 572 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 SLC22A20A6NK97 555 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 CEACAM18A8MTB9 384 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 PRAMEF26H0Y7S4 382 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 ZBTB5O15062 677 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 TCAPO15273 167 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 SIVA1O15304 175 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 ZNF207O43670 478 aaKnown RBP1.54□□□□□ -2.16
CD44-238ENST00000534296 SCELO95171 688 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 ETHE1O95571 254 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 IGLV3-25P01717 112 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 DCNP07585 359 aaKnown RBP1.54□□□□□ -2.16
CD44-238ENST00000534296 MMP7P09237 267 aaPredicted RBP1.54□□□□□ -2.16
CD44-238ENST00000534296 TACSTD2P09758 323 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 TUBG1P23258 451 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 MPIP34949 423 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 BMI1P35226 326 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 DEKP35659 375 aaKnown RBP1.54□□□□□ -2.16
CD44-238ENST00000534296 NUP62P37198 522 aaPredicted RBP1.54□□□□□ -2.16
CD44-238ENST00000534296 MYCNOSP40205 109 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 NBL1P41271 181 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 KIR3DL2P43630 455 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 GALR1P47211 349 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 OR1G1P47890 313 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 DAOAP59103 153 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 PSMC5P62195 406 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 PAFAH1B2P68402 229 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 SLC35A1P78382 337 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 BIKQ13323 160 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 OR1Q1Q15612 314 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 TSC22D1Q15714 1073 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 MED27Q6P2C8 311 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 PRSS54Q6PEW0 395 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 FAM122BQ7Z309 247 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 OR2W3Q7Z3T1 314 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 SLC7A5P1Q8MH63 180 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 ZNF645Q8N7E2 425 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 OR10W1Q8NGF6 305 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 OR5M1Q8NGP8 315 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 OR1L1Q8NH94 360 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 TCP10LQ8TDR4 215 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 RXFP2Q8WXD0 754 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 OR4K3Q96R72 315 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 NAA50Q9GZZ1 169 aaKnown RBP1.54□□□□□ -2.16
CD44-238ENST00000534296 FANCEQ9HB96 536 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 TUBG2Q9NRH3 451 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 TREX1Q9NSU2 369 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 TAS2R5Q9NYW4 299 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 PEF1Q9UBV8 284 aaKnown RBP1.54□□□□□ -2.16
CD44-238ENST00000534296 RAB22AQ9UL26 194 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 FARSAQ9Y285 508 aaKnown RBP1.54□□□□□ -2.16
CD44-238ENST00000534296 UBIAD1Q9Y5Z9 338 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 COMMD3-BMI1R4GMX3 469 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 S4R3C0 116 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 ADGRA3Q8IWK6 1321 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 PCDH11XQ9BZA7 1347 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 DOCK8Q8NF50 2099 aa1.54□□□□□ -2.16
CD44-238ENST00000534296 ZNF99A8MXY4 864 aaPredicted RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 SEC14L6B5MCN3 397 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 ZNF701M0R085 212 aaPredicted RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 PSPHP1O15172 72 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 AQRO60306 1485 aaKnown RBP eCLIP1.53□□□□□ -2.16
CD44-238ENST00000534296 CD5P06127 495 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 COL1A2P08123 1366 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 HLA-GP17693 338 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 CD70P32970 193 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 ATP6V0D1P61421 351 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 SLC35B1P78383 322 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 ZNF616Q08AN1 781 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 ATP6V1FQ16864 119 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 SP6Q3SY56 376 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 C6orf99Q4VX62 202 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 IDNKQ5T6J7 187 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 PRR9Q5T870 116 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 FAM222AQ5U5X8 452 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 DEGS2Q6QHC5 323 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 UGT2A3Q6UWM9 527 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 SLC35D2Q76EJ3 337 aa1.53□□□□□ -2.16
CD44-238ENST00000534296 MRPL21Q7Z2W9 205 aaKnown RBP1.53□□□□□ -2.16
CD44-238ENST00000534296 SGPP2Q8IWX5 399 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms