RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-215	ENST00000533440	MRPL41	Q8IXM3	137 aa	Known RBP	6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	OR8J3	Q8NGG0	315 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	RPS4Y2	Q8TD47	263 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	LZIC	Q8WZA0	190 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	MYDGF	Q969H8	173 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	ZBTB9	Q96C00	473 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	FAM46A	Q96IP4	442 aa	Known RBP	6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	TPD52L3	Q96J77	140 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	ANKRD19P	Q9H560	264 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	PPP1R3E	Q9H7J1	279 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	ELL3	Q9HB65	397 aa	Predicted RBP	6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	ABCB10	Q9NRK6	738 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	C19orf12	Q9NSK7	152 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	MRPL22	Q9NWU5	206 aa	Known RBP	6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	GAR1	Q9NY12	217 aa	Known RBP	6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	ZMAT5	Q9UDW3	170 aa	Known RBP	6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	KCNG2	Q9UJ96	466 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	ZNF222	Q9UK12	451 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	LRP12	Q9Y561	859 aa		6.25	□□□□□ -1.41
NXF1-215	ENST00000533440	HERC2	O95714	4834 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	IGKV1D-17	A0A075B6S4	117 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	OR2AT4	A6NND4	320 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440		H0YHG0	523 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440		J3QL48	77 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	FXYD1	O00168	92 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	AKR7A2	O43488	359 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	IFNW1	P05000	195 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	TROVE2	P10155	538 aa	Known RBP eCLIP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	COX7A1	P24310	79 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	OMP	P47874	163 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	SLC25A1	P53007	311 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	ERVFRD-1	P60508	538 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	GMFB	P60983	142 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	CYLC2	Q14093	348 aa	Predicted RBP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	PLA1A	Q53H76	456 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	FAM76B	Q5HYJ3	339 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	DMRTC1	Q5HYR2	192 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	LDLRAD2	Q5SZI1	272 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	RRM2B	Q7LG56	351 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	SLC16A9	Q7RTY1	509 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	VTCN1	Q7Z7D3	282 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	CENPV	Q7Z7K6	275 aa	Predicted RBP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	CROCCP2	Q86T23	111 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	ZDHHC21	Q8IVQ6	265 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	FAM185A	Q8N0U4	392 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	ZNRF1	Q8ND25	227 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	STON2	Q8WXE9	905 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	RPL3L	Q92901	407 aa	Known RBP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	FOXRED1	Q96CU9	486 aa	Predicted RBP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	MALSU1	Q96EH3	234 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	SDSL	Q96GA7	329 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	RSRC1	Q96IZ7	334 aa	Known RBP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	NMNAT3	Q96T66	252 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	SH3GL1	Q99961	368 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	MCRIP2	Q9BUT9	160 aa	Known RBP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	RPRD1B	Q9NQG5	326 aa	Known RBP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	PGPEP1	Q9NXJ5	209 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	NKIRAS1	Q9NYS0	192 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	NLK	Q9UBE8	527 aa		6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	TBL2	Q9Y4P3	447 aa	Known RBP	6.24	□□□□□ -1.41
NXF1-215	ENST00000533440	hCG_38984	A0A1B0GV85	526 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440		A0A1W2PPH5	198 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	OR6C68	A6NDL8	312 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	TMEM210	A6NLX4	147 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	FAM90A22P	A8MWA6	464 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	ODF3B	A8MYP8	253 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	ARPC3	O15145	178 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	RAMP3	O60896	148 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	REN	P00797	406 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	HLA-DQA2	P01906	255 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	CCDC159	P0C7I6	412 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	SLC2A1	P11166	492 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	PSG2	P11465	335 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	PSKH1	P11801	424 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	HIST1H1C	P16403	213 aa	Known RBP	6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	DCTD	P32321	178 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	RPS27	P42677	84 aa	Known RBP	6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	GABRA2	P47869	451 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	THBS3	P49746	956 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	PRKX	P51817	358 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	DGCR2	P98153	550 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	IL5RA	Q01344	420 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	SSX2	Q16385	188 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	KLHL12	Q53G59	568 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	AGBL2	Q5U5Z8	902 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	ZNF626	Q68DY1	528 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	TMEM200B	Q69YZ2	307 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	SMARCD3	Q6STE5	483 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	C10orf99	Q6UWK7	81 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	UNQ9370/PRO34162	Q6UXP9	181 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	TMEM185A	Q8NFB2	350 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	OR4X2	Q8NGF9	303 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	OR4C15	Q8NGM1	316 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	SGK3	Q96BR1	496 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	ERMAP	Q96PL5	475 aa	Predicted RBP	6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	KCNJ15	Q99712	375 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	MICU1	Q9BPX6	476 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	USE1	Q9NZ43	259 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	RHBDD3	Q9Y3P4	386 aa		6.23	□□□□□ -1.41
NXF1-215	ENST00000533440	hCG_1809904	A0A1W2PP81	198 aa		6.22	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms