RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ASPHD2Q6ICH7 369 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 GDPGP1Q6ZNW5 385 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 FAM57BQ71RH2 274 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 AQP12AQ8IXF9 295 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 GALNT4Q8N4A0 578 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 ZSCAN4Q8NAM6 433 aaPredicted RBP9.33□□□□□ -0.92
VPS28-214ENST00000531032 CSNK2A3Q8NEV1 391 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 OR6N2Q8NGY6 317 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 C8orf46Q8TAG6 207 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 GIPC3Q8TF64 312 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 NPRL2Q8WTW4 380 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 LRTOMTQ8WZ04 291 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 OTULINQ96BN8 352 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 ITPKCQ96DU7 683 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 SEH1LQ96EE3 360 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 INTS14Q96SY0 518 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 RBM4BQ9BQ04 359 aaKnown RBP9.33□□□□□ -0.92
VPS28-214ENST00000531032 ABHD6Q9BV23 337 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 CHID1Q9BWS9 393 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 PAPOLGQ9BWT3 736 aaKnown RBP9.33□□□□□ -0.92
VPS28-214ENST00000531032 RGCCQ9H4X1 137 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 PPP1R3EQ9H7J1 279 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 CMC2Q9NRP2 79 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 VNN3Q9NY84 501 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 DNAJC27Q9NZQ0 273 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 ZNRD1Q9P1U0 126 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 ONECUT1Q9UBC0 465 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 FAM96BQ9Y3D0 163 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 RHBDD3Q9Y3P4 386 aa9.33□□□□□ -0.92
VPS28-214ENST00000531032 ANXA2P2A6NMY6 339 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 RNASEK-C17orf49H0YIS7 233 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 CDIPTO14735 213 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 NDUFB3O43676 98 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 FBP1P09467 338 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 GNALP38405 381 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 IL5RAQ01344 420 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 GUCA2AQ02747 115 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 IKZF1Q13422 519 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 SNCBQ16143 134 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 LRRC10Q5BKY1 277 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 CD300LDQ6UXZ3 194 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 Q6ZSV7 163 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 ERI1Q8IV48 349 aaKnown RBP9.32□□□□□ -0.92
VPS28-214ENST00000531032 TIGD4Q8IY51 512 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 ADGRG5Q8IZF4 528 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 CMTM4Q8IZR5 234 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 FTMTQ8N4E7 242 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 Q8N7P7 452 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 OR10Z1Q8NGY1 313 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 CANT1Q8WVQ1 401 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 AMELYQ99218 206 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 DCTN5Q9BTE1 182 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 DNTTIP1Q9H147 329 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 OR10A2Q9H208 303 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 SEMA6AQ9H2E6 1030 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 C16orf95Q9H693 158 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 ZNF556Q9HAH1 456 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 SIRT7Q9NRC8 400 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 HAO2Q9NYQ3 351 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 VPREB3Q9UKI3 123 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 CAB39Q9Y376 341 aaPredicted RBP9.32□□□□□ -0.92
VPS28-214ENST00000531032 MPC1Q9Y5U8 109 aa9.32□□□□□ -0.92
VPS28-214ENST00000531032 A0A0G2JK05 382 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 FAM183AA6NL82 134 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 TMEM210A6NLX4 147 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 NPFFO15130 113 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 DNAJC8O75937 253 aaPredicted RBP9.31□□□□□ -0.92
VPS28-214ENST00000531032 GLCEO94923 617 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 SELLP14151 372 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 PAICSP22234 425 aaKnown RBP9.31□□□□□ -0.92
VPS28-214ENST00000531032 ACKR3P25106 362 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 POU1F1P28069 291 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 GSTT1P30711 240 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 GFOD2Q3B7J2 385 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 FAM76BQ5HYJ3 339 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 DHRS7BQ6IAN0 325 aaPredicted RBP9.31□□□□□ -0.92
VPS28-214ENST00000531032 SHFQ7M4L6 423 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 OR5P3Q8WZ94 311 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 TNFRSF14Q92956 283 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 PGAM5Q96HS1 289 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 RAB3IPQ96QF0 476 aaPredicted RBP9.31□□□□□ -0.92
VPS28-214ENST00000531032 NIPSNAP1Q9BPW8 284 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 MICU1Q9BPX6 476 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 RTL8AQ9BWD3 113 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 TEX12Q9BXU0 123 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 WDR13Q9H1Z4 485 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 MED20Q9H944 212 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 TCF7L1Q9HCS4 588 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 ABCB9Q9NP78 766 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 DNAJB11Q9UBS4 358 aa9.31□□□□□ -0.92
VPS28-214ENST00000531032 BTBD17A6NE02 478 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 ARRDC5A6NEK1 342 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 NKX6-3A6NJ46 265 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 SLC22A31A6NKX4 558 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 TSPAN9O75954 239 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 CST4P01036 141 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 H2BFMP0C1H6 154 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 EEF1B2P24534 225 aaKnown RBP9.3□□□□□ -0.92
VPS28-214ENST00000531032 DCTDP32321 178 aa9.3□□□□□ -0.92
VPS28-214ENST00000531032 DLX1P56177 255 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms