RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CDC6Q99741 560 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 MYO7BQ6PIF6 2116 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 BCAT2O15382 392 aaPredicted RBP16.95■□□□□ 0.3
VPS28-213ENST00000530983 SCRG1O75711 98 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 ACTL6AO96019 429 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 SCRN3Q0VDG4 424 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 C1QL2Q7Z5L3 287 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 FAM89BQ8N5H3 189 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 PAQR8Q8TEZ7 354 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 URM1Q9BTM9 101 aaKnown RBP16.95■□□□□ 0.3
VPS28-213ENST00000530983 TOX3O15405 576 aaPredicted RBP16.95■□□□□ 0.3
VPS28-213ENST00000530983 ZFAND5O76080 213 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 CD79AP11912 226 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 IGFBP4P22692 258 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 ARFRP1Q13795 201 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 OR5D18Q8NGL1 313 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 OR10A2Q9H208 303 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 OR5AC2Q9NZP5 309 aa16.95■□□□□ 0.3
VPS28-213ENST00000530983 PQLC2LA1A4F0 135 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 PRSS44E7EML9 344 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 NAT2P11245 290 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 LYL1P12980 280 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 AMY2BP19961 511 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 DHPSP49366 369 aaPredicted RBP16.94■□□□□ 0.3
VPS28-213ENST00000530983 MEOX2P50222 304 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 DCDP81605 110 aaKnown RBP16.94■□□□□ 0.3
VPS28-213ENST00000530983 ACY1Q03154 408 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 TMEM176BQ3YBM2 270 aaPredicted RBP16.94■□□□□ 0.3
VPS28-213ENST00000530983 WDSUB1Q8N9V3 476 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 TMED6Q8WW62 240 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 LYZL4Q96KX0 146 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 SPSB2Q99619 263 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 ST6GALNAC5Q9BVH7 336 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 BIN3Q9NQY0 253 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 OSGIN2Q9Y236 505 aa16.94■□□□□ 0.3
VPS28-213ENST00000530983 RTTNQ86VV8 2226 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 AQP7P3A6NL99 342 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 FOXI3A8MTJ6 420 aaPredicted RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 SDCBPO00560 298 aaPredicted RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 DKK1O94907 266 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 HTR3BO95264 441 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 RFC3P40938 356 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 GRB2P62993 217 aaKnown RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 AIMP2Q13155 320 aaKnown RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 SHBQ15464 509 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 KISS1Q15726 138 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 ZNF239Q16600 458 aaKnown RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 NKAPLQ5M9Q1 402 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 LCN10Q6JVE6 187 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 PRSS54Q6PEW0 395 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 OR51T1Q8NGJ9 327 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 RNF141Q8WVD5 230 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 DNASE2BQ8WZ79 361 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 LIN37Q96GY3 246 aaPredicted RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 OR10C1Q96KK4 312 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 LHX6Q9UPM6 363 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 ZNF726A6NNF4 738 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 RPS2P15880 293 aaKnown RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 FAM189A2Q15884 450 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 ZNF385CQ66K41 422 aaPredicted RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 DHRS7BQ6IAN0 325 aaPredicted RBP16.93■□□□□ 0.3
VPS28-213ENST00000530983 DTX1Q86Y01 620 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 FAM219AQ8IW50 185 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 NPRL2Q8WTW4 380 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 MAFIPQ8WZ33 124 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 RASL10BQ96S79 203 aa16.93■□□□□ 0.3
VPS28-213ENST00000530983 IGLV3-1P01715 115 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 FAM157CP0CG43 387 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 PRF1P14222 555 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 PTGFRP43088 359 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 SNU13P55769 128 aaKnown RBP16.92■□□□□ 0.3
VPS28-213ENST00000530983 SRSF3P84103 164 aaKnown RBP16.92■□□□□ 0.3
VPS28-213ENST00000530983 PLEKHN1Q494U1 663 aaPredicted RBP16.92■□□□□ 0.3
VPS28-213ENST00000530983 Q7L0L9 218 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 SPACA9Q96E40 222 aaPredicted RBP16.92■□□□□ 0.3
VPS28-213ENST00000530983 CRB3Q9BUF7 120 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.92■□□□□ 0.3
VPS28-213ENST00000530983 F12P00748 615 aaPredicted RBP16.92■□□□□ 0.3
VPS28-213ENST00000530983 APOC1P02654 83 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 GLRA1P23415 457 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 CTSSP25774 331 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 OR3A2P47893 321 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 ECH1Q13011 328 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 FADS6Q8N9I5 356 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 OR51F2Q8NH61 342 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 SLC22A8Q8TCC7 542 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 SLC25A43Q8WUT9 341 aaPredicted RBP16.92■□□□□ 0.3
VPS28-213ENST00000530983 SCGB3A2Q96PL1 93 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 HDGFL3Q9Y3E1 203 aa16.92■□□□□ 0.3
VPS28-213ENST00000530983 LOC102725191A0A1B0GVB3 256 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 HPNP05981 417 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 ALDH3B1P43353 468 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 CLDN17P56750 224 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 CSNK2A1P68400 391 aaPredicted RBP16.91■□□□□ 0.3
VPS28-213ENST00000530983 PNLDC1Q8NA58 520 aaKnown RBP16.91■□□□□ 0.3
VPS28-213ENST00000530983 CSNK2A3Q8NEV1 391 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 PGAM5Q96HS1 289 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 AQP10Q96PS8 301 aa16.91■□□□□ 0.3
VPS28-213ENST00000530983 CMSS1Q9BQ75 279 aaKnown RBP16.91■□□□□ 0.3
VPS28-213ENST00000530983 SLC26A1Q9H2B4 701 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms