RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OR4C16Q8NGL9 310 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 TNFAIP8L1Q8WVP5 186 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 TMEM59Q9BXS4 323 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 AHRRA9YTQ3 701 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 GTF2F2P13984 249 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 FAUP35544 74 aaKnown RBP17.93■□□□□ 0.46
VPS28-209ENST00000528142 ZP1P60852 638 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 LINC00303Q3SY05 128 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 SLC22A6Q4U2R8 563 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 C9orf106Q8NAJ2 232 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 TMEM229BQ8NBD8 167 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 CHST4Q8NCG5 386 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 OR4D10Q8NGI6 311 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 ZNF75AQ96N20 296 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 SELENOIQ9C0D9 397 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 ZNF107Q9UII5 783 aaPredicted RBP17.93■□□□□ 0.46
VPS28-209ENST00000528142 ING4Q9UNL4 249 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 OR14I1A6ND48 311 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 CRTAPO75718 401 aaPredicted RBP17.93■□□□□ 0.46
VPS28-209ENST00000528142 NRASP01111 189 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 CD3DP04234 171 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 AKAIN1P0CW23 69 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 CCNOP22674 350 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 PRKACBP22694 351 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 ID4P47928 161 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 PLP2Q04941 152 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 CNN3Q15417 329 aaKnown RBP17.93■□□□□ 0.46
VPS28-209ENST00000528142 ACSF3Q4G176 576 aaPredicted RBP17.93■□□□□ 0.46
VPS28-209ENST00000528142 GABRG1Q8N1C3 465 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 FAM89BQ8N5H3 189 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 REPIN1Q9BWE0 567 aaKnown RBP17.93■□□□□ 0.46
VPS28-209ENST00000528142 DKK4Q9UBT3 224 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 FLVCR2Q9UPI3 526 aa17.93■□□□□ 0.46
VPS28-209ENST00000528142 IGKV1-27A0A075B6S5 117 aa17.92■□□□□ 0.46
VPS28-209ENST00000528142 NDUFB6O95139 128 aa17.92■□□□□ 0.46
VPS28-209ENST00000528142 IGHV1-2P23083 117 aa17.92■□□□□ 0.46
VPS28-209ENST00000528142 KIR2DL2P43627 348 aaPredicted RBP17.92■□□□□ 0.46
VPS28-209ENST00000528142 MTCP1P56278 107 aa17.92■□□□□ 0.46
VPS28-209ENST00000528142 RPS27AP62979 156 aaKnown RBP17.92■□□□□ 0.46
VPS28-209ENST00000528142 FAM189A2Q15884 450 aa17.92■□□□□ 0.46
VPS28-209ENST00000528142 ZBTB37Q5TC79 503 aa17.92■□□□□ 0.46
VPS28-209ENST00000528142 APOBEC3DQ96AK3 386 aaPredicted RBP17.92■□□□□ 0.46
VPS28-209ENST00000528142 CST11Q9H112 138 aa17.92■□□□□ 0.46
VPS28-209ENST00000528142 RANGRFQ9HD47 186 aaPredicted RBP17.92■□□□□ 0.46
VPS28-209ENST00000528142 NKIRAS2Q9NYR9 191 aa17.92■□□□□ 0.46
VPS28-209ENST00000528142 URB1O60287 2271 aaKnown RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 ZNF816-ZNF321PA0A0X1KG74 233 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 SOCS1O15524 211 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 PEX14O75381 377 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 FCER2P06734 321 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 GNB3P16520 340 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 TMEM50BP56557 158 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 TAS2R19P59542 299 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 PLAC9Q5JTB6 97 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 STEAP1BQ6NZ63 245 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 RPUSD3Q6P087 351 aaKnown RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 RTN4RL2Q86UN3 420 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 FJX1Q86VR8 437 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 NANOS1Q8WY41 292 aaKnown RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 DVL3Q92997 716 aaPredicted RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 URM1Q9BTM9 101 aaKnown RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 OR10A4Q9H209 315 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 ICMTO60725 284 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 GK2Q14410 553 aaPredicted RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 MDP1Q86V88 176 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 OR8S1Q8NH09 359 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 GIMAP1Q8WWP7 306 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 FYTTD1Q96QD9 318 aaKnown RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 BEX2Q9BXY8 128 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 TP63Q9H3D4 680 aaPredicted RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 NEK6Q9HC98 313 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 POU2F3Q9UKI9 436 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 LHX6Q9UPM6 363 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 KCNK7Q9Y2U2 307 aa17.91■□□□□ 0.46
VPS28-209ENST00000528142 ANKRD11Q6UB99 2663 aaPredicted RBP17.91■□□□□ 0.46
VPS28-209ENST00000528142 IGF2RP11717 2491 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 ARHGAP21Q5T5U3 1957 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 FAM230AA0A1W2PPH8 454 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 FOXI3A8MTJ6 420 aaPredicted RBP17.9■□□□□ 0.46
VPS28-209ENST00000528142 CNOT4O95628 575 aaKnown RBP17.9■□□□□ 0.46
VPS28-209ENST00000528142 NGFP01138 241 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 CD74P04233 296 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 MGMTP16455 207 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 CD83Q01151 205 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 NSUN5P2Q63ZY6 315 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 Q6ZT83 130 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 LHFPL2Q6ZUX7 228 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 OR56B1Q8NGI3 324 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 OR10K1Q8NGX5 313 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 MS4A3Q96HJ5 214 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 TM2D1Q9BX74 207 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 OR51J1Q9H342 316 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 STARD10Q9Y365 291 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 NCOR2Q9Y618 2525 aa17.9■□□□□ 0.46
VPS28-209ENST00000528142 ARPC1BO15143 372 aaKnown RBP17.89■□□□□ 0.45
VPS28-209ENST00000528142 SSX5O60225 188 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 SERPINA5P05154 406 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 RCVRNP35243 200 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 RBP2P50120 134 aa17.89■□□□□ 0.45
VPS28-209ENST00000528142 MECP2P51608 486 aaKnown RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms