RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 RPL31P62899 125 aaKnown RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 PRKCDQ05655 676 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 DYNC1I2Q13409 638 aaKnown RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 EIF2B1Q14232 305 aaKnown RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 PTGES3Q15185 160 aaKnown RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 CARD16Q5EG05 197 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 FAM45BPQ6NSW5 357 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 Q6ZT83 130 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 S100A7AQ86SG5 101 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 BBS7Q8IWZ6 715 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 RIMKLAQ8IXN7 391 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 OR2AE1Q8NHA4 323 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 C11orf45Q8TAV5 145 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 SLC7A13Q8TCU3 470 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 SFXN5Q8TD22 340 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 OR5P2Q8WZ92 322 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 GTF3AQ92664 365 aaKnown RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 ANKRD9Q96BM1 317 aaPredicted RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 TLCD1Q96CP7 247 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 OXGR1Q96P68 337 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 ATF6BQ99941 703 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 FAIM2Q9BWQ8 316 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 HCAR1Q9BXC0 346 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 FGFBP2Q9BYJ0 223 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 KRTAP1-5Q9BYS1 174 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 FBXO8Q9NRD0 319 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 CMTM6Q9NX76 183 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 LGALS13Q9UHV8 139 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 TMCO1Q9UM00 188 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 PSG11Q9UQ72 335 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 ARL2BPQ9Y2Y0 163 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 ARL5AQ9Y689 179 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 C5orf42Q9H799 3197 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 MICAL3Q7RTP6 2002 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 PTPRSQ13332 1948 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 TRIOO75962 3097 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 COL4A6Q14031 1691 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 IGLV7-46A0A075B6I9 117 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 TRBV5-4A0A0C4DH59 114 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 EFCAB10A6NFE3 127 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 ZNF729A6NN14 1252 aaPredicted RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 RNF212BA8MTL3 300 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 HACD1B0YJ81 288 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 GFYI3L273 518 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 KMOO15229 486 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 MPZL2O60487 215 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 RAMP1O60894 148 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 CLIC3O95833 236 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 ISG15P05161 165 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 HOXD4P09016 255 aaPredicted RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 UCHL3P15374 230 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 CSNK2A2P19784 350 aaPredicted RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 FUT3P21217 361 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 GNRHRP30968 328 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 ARL2P36404 184 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 TFPI2P48307 235 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 OR10A3P58181 314 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 FAM3AP98173 230 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 HMGCS1Q01581 520 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 TNFRSF9Q07011 255 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 LAMTOR4Q0VGL1 99 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 OR5I1Q13606 314 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 OXA1LQ15070 435 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 TRIM16LQ309B1 348 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 CCDC58Q4VC31 144 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 MARC1Q5VT66 337 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 SAXO2Q658L1 398 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 CD200R1LQ6Q8B3 271 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 FAM92BQ6ZTR7 304 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 FAM19A1Q7Z5A9 133 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 ZNF329Q86UD4 541 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 CARM1Q86X55 608 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 STK40Q8N2I9 435 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 PRELID2Q8N945 189 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 RNF138Q8WVD3 245 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 TFB1MQ8WVM0 346 aaKnown RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 ZNF689Q96CS4 500 aaPredicted RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 RAB3CQ96E17 227 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 Q96MT0 163 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 CDX2Q99626 313 aaPredicted RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 SDHCQ99643 169 aaPredicted RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 TMEM59Q9BXS4 323 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 KRTAP17-1Q9BYP8 105 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 UBXN6Q9BZV1 441 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 ARL6Q9H0F7 186 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 TLNRD1Q9H1K6 362 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 OR51B5Q9H339 312 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 ZSCAN16Q9H4T2 348 aaPredicted RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 CWH43Q9H720 699 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 CAB39LQ9H9S4 337 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 Q9HAA7 133 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 PLEKHA3Q9HB20 300 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 ZDHHC4Q9NPG8 344 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 RGS18Q9NS28 235 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 DDX19AQ9NUU7 478 aaKnown RBP3.81□□□□□ -1.8
CD44-220ENST00000525688 ENOPH1Q9UHY7 261 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 MGAT4AQ9UM21 535 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 ACOT9Q9Y305 439 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 GBF1Q92538 1859 aa3.81□□□□□ -1.8
CD44-220ENST00000525688 LOXHD1Q8IVV2 1947 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms