RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TMEM127O75204 238 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 AHSA1O95433 338 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 CD27P26842 260 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 SLC6A8P48029 635 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 DCDP81605 110 aaKnown RBP8.57□□□□□ -1.04
VCAN-210ENST00000513960 SP6Q3SY56 376 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 TSLPQ969D9 159 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 SGK3Q96BR1 496 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 SAT2Q96F10 170 aaPredicted RBP8.57□□□□□ -1.04
VCAN-210ENST00000513960 UCK1Q9HA47 277 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 SLC17A5Q9NRA2 495 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 CACFD1Q9UGQ2 172 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 NPIPA1Q9UND3 350 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 LRP4O75096 1905 aa8.57□□□□□ -1.04
VCAN-210ENST00000513960 CSTBP04080 98 aaKnown RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 FAM157CP0CG43 387 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 SCAND1P57086 179 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 HNRNPKP61978 463 aaKnown RBP eCLIP8.56□□□□□ -1.04
VCAN-210ENST00000513960 ANKRD55Q3KP44 614 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 EEF1A1P5Q5VTE0 462 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 MAMDC2Q7Z304 686 aaPredicted RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 ABHD12BQ7Z5M8 362 aaPredicted RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 CPEB2Q7Z5Q1 589 aaKnown RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 C17orf78Q8N4C9 275 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 OR1J1Q8NGS3 322 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 RNF128Q8TEB7 428 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 LMAN1LQ9HAT1 526 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 MRPS28Q9Y2Q9 187 aaKnown RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 IGHV1OR15-9A0A0B4J2B8 117 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 SOCS1O15524 211 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 CYB5BO43169 146 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 SFT2D2O95562 160 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 GP1BBP13224 206 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 MDKP21741 143 aaPredicted RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 EMC4Q5J8M3 183 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 ZNF684Q5T5D7 378 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 TMEM244Q5VVB8 128 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 CARD17Q5XLA6 110 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 ZNF343Q6P1L6 599 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 OR56B1Q8NGI3 324 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 GPR119Q8TDV5 335 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 OIT3Q8WWZ8 545 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 TMEM59Q9BXS4 323 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 NMES1Q9C002 83 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 COPS7AQ9UBW8 275 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 FRG2CA6NGY1 282 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 RAB27BO00194 218 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 IGFBP4P22692 258 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 GPX4P36969 197 aaPredicted RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 GABRA4P48169 554 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 NAAAQ02083 359 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 HMGN3Q15651 99 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 NSDHLQ15738 373 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 TOMM34Q15785 309 aaPredicted RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 PTCRAQ6ISU1 281 aaPredicted RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 SUMF1Q8NBK3 374 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 APCDD1LQ8NCL9 501 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 DAZLQ92904 295 aaKnown RBP8.56□□□□□ -1.04
VCAN-210ENST00000513960 EMC6Q9BV81 110 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 FOXQ1Q9C009 403 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 PPP4R1LQ9P1A2 415 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 KIF26BQ2KJY2 2108 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 SZT2Q5T011 3432 aa8.56□□□□□ -1.04
VCAN-210ENST00000513960 PRSS37A4D1T9 235 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 C2orf72A6NCS6 295 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 BTBD17A6NE02 478 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 ZNF729A6NN14 1252 aaPredicted RBP8.55□□□□□ -1.04
VCAN-210ENST00000513960 ZNF726A6NNF4 738 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 NXPH3O95157 252 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 CST4P01036 141 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 IGHV2-70P01814 119 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 HEXAP06865 529 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 ASAH2BP0C7U1 165 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 SNU13P55769 128 aaKnown RBP8.55□□□□□ -1.04
VCAN-210ENST00000513960 MEX3BQ6ZN04 569 aaKnown RBP8.55□□□□□ -1.04
VCAN-210ENST00000513960 SLC22A24Q8N4F4 322 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 LIPHQ8WWY8 451 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 CYYR1Q96J86 154 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 GPR61Q9BZJ8 451 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 LANCL2Q9NS86 450 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 NOSIPQ9Y314 301 aaKnown RBP8.55□□□□□ -1.04
VCAN-210ENST00000513960 A0A087X0M5 115 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 A0A1B0GX30 115 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 C10orf142B7Z368 130 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 JTBO76095 146 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 CLPSP04118 112 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 VSIG8P0DPA2 414 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 PGCP20142 388 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 DCAF7P61962 342 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 EGR4Q05215 589 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 PLCXD2Q0VAA5 305 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 SURF2Q15527 256 aaPredicted RBP8.55□□□□□ -1.04
VCAN-210ENST00000513960 ZNF260Q3ZCT1 412 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 FNDC7Q5VTL7 733 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 NSUN5P2Q63ZY6 315 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 SULF2Q8IWU5 870 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 SGPP2Q8IWX5 399 aa8.55□□□□□ -1.04
VCAN-210ENST00000513960 OR52N5Q8NH56 324 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms