RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 MFNGO00587 321 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 MBTPS2O43462 519 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 FOSL2P15408 326 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF43P17038 809 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 RAB13P51153 203 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 LBX1P52954 281 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 IAH1Q2TAA2 248 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 MISPQ8IVT2 679 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 NAXEQ8NCW5 288 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 PIGTQ969N2 578 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 C2orf50Q96LR7 162 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 HDHD3Q9BSH5 251 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 DUX1O43812 170 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 KISS1Q15726 138 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 PRAMEF20Q5VT98 475 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 DTX1Q86Y01 620 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 POC1BQ8TC44 478 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF775Q96BV0 537 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF501Q96CX3 271 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 TAF9BQ9HBM6 251 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 RNASEK-C17orf49H0YIS7 233 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 TRAF3IP2O43734 574 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 SCGB1D2O95969 90 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 H2AFB1P0C5Y9 115 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 FAHP16930 419 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 FPR2P25090 351 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 GSK3AP49840 483 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 ACY1Q03154 408 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 CHRFAM7AQ494W8 412 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 DHRS7BQ6IAN0 325 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 C6orf201Q7Z4U5 140 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 PLPP5Q8NEB5 264 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 RXFP4Q8TDU9 374 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 ZFP57Q9NU63 452 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 KLHL13Q9P2N7 655 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 OR2J2O76002 312 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 TIAF1O95411 115 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 CSTBP04080 98 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 PGA4P0DJD7 388 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 PGA3P0DJD8 388 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 GABRR1P24046 479 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 CHAF1BQ13112 559 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 OGFOD3Q6PK18 319 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 NECAB3Q96P71 396 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 SLC5A7Q9GZV3 580 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 CHRNA10Q9GZZ6 450 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 FBLN5Q9UBX5 448 aa8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 LSM5Q9Y4Y9 91 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-215ENST00000512632 MEX3AA1L020 520 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 FCGR2AP12318 317 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 RFC3P40938 356 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PTGFRP43088 359 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 SP6Q3SY56 376 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 Q7L0L9 218 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 ANKRD37Q7Z713 158 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 LRRC18Q8N456 261 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 NOXO1Q8NFA2 376 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 S100A13Q99584 98 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 OCSTAMPQ9BR26 566 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 CARHSP1Q9Y2V2 147 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PIAS2O75928 621 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PTGER4P35408 488 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 RBMXP38159 391 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 SMAD4Q13485 552 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PEA15Q15121 130 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 SYT13Q7L8C5 426 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 POC1AQ8NBT0 407 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 OSGIN2Q9Y236 505 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 OR5H15A6NDH6 313 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 HPNP05981 417 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 RPS2P15880 293 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 CLDN17P56750 224 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 UBE2V2Q15819 145 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PLPPR5Q32ZL2 321 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 NKAIN1Q4KMZ8 207 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 FAM76BQ5HYJ3 339 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 ADAMTS17Q8TE56 1095 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 SCGB3A2Q96PL1 93 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 AQP10Q96PS8 301 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 SEC11CQ9BY50 192 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF160Q9HCG1 818 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PLA2G2EQ9NZK7 142 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 RCC2Q9P258 522 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 CA14Q9ULX7 337 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PCDHGA1Q9Y5H4 931 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PMS2P1A4D2B8 440 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 DHRS7CA6NNS2 312 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 DBHP09172 617 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 SFTA3P0C7M3 94 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 OPRM1P35372 400 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 HOXA1P49639 335 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 SPEM2Q0P670 501 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 PNLIPRP3Q17RR3 467 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 ZNF528Q3MIS6 628 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 ACTBL2Q562R1 376 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 LHFPL1Q86WI0 220 aa8.14□□□□□ -1.11
LIMCH1-215ENST00000512632 NFAM1Q8NET5 270 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms