RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 FAM46AQ96IP4 442 aaKnown RBP13.37□□□□□ -0.27
VIM-208ENST00000497849 MEGF9Q9H1U4 602 aa13.37□□□□□ -0.27
VIM-208ENST00000497849 ANKRD19PQ9H560 264 aa13.37□□□□□ -0.27
VIM-208ENST00000497849 REEP1Q9H902 201 aa13.37□□□□□ -0.27
VIM-208ENST00000497849 STAB2Q8WWQ8 2551 aa13.37□□□□□ -0.27
VIM-208ENST00000497849 A6NLC8 198 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 F5H5K5 113 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.36□□□□□ -0.27
VIM-208ENST00000497849 ANOS1P23352 680 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 OMPP47874 163 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 SLC9A3P48764 834 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 PCK2Q16822 640 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 C11orf53Q8IXP5 236 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 Q8N2B8 174 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 PIFOQ8TCI5 191 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 SEH1LQ96EE3 360 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 ZNF570Q96NI8 536 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 DNAJB9Q9UBS3 223 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 POLR1DQ9Y2S0 133 aa13.36□□□□□ -0.27
VIM-208ENST00000497849 NOP16Q9Y3C1 178 aaKnown RBP13.36□□□□□ -0.27
VIM-208ENST00000497849 DNAH1Q9P2D7 4330 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 hCG_1807616A0A1W2PRN6 198 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 EFCAB9A8MZ26 197 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 CDC42EP2O14613 210 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 CCNB2O95067 398 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 LCATP04180 440 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 SELLP14151 372 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 MUC1P15941 1255 aaPredicted RBP13.35□□□□□ -0.27
VIM-208ENST00000497849 PRKACGP22612 351 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 FASP25445 335 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 RPL4P36578 427 aaKnown RBP13.35□□□□□ -0.27
VIM-208ENST00000497849 TGM4P49221 684 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 MALLQ13021 153 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 IKZF1Q13422 519 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 AANATQ16613 207 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 MICBQ29980 383 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 NCR3LG1Q68D85 454 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 MRPL21Q7Z2W9 205 aaKnown RBP13.35□□□□□ -0.27
VIM-208ENST00000497849 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.35□□□□□ -0.27
VIM-208ENST00000497849 RNF113BQ8IZP6 322 aaKnown RBP13.35□□□□□ -0.27
VIM-208ENST00000497849 DTX3Q8N9I9 347 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 NKX3-1Q99801 234 aaPredicted RBP13.35□□□□□ -0.27
VIM-208ENST00000497849 WNT10AQ9GZT5 417 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 NUAK2Q9H093 628 aa13.35□□□□□ -0.27
VIM-208ENST00000497849 VSX1Q9NZR4 365 aaPredicted RBP13.35□□□□□ -0.27
VIM-208ENST00000497849 NDUFB3O43676 98 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 E2F6O75461 281 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 GASTP01350 101 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 BMXP51813 675 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 EGFEM1PQ0D2K5 195 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 KRR1Q13601 381 aaKnown RBP13.34□□□□□ -0.27
VIM-208ENST00000497849 ATP6AP1Q15904 470 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 CFAP77Q6ZQR2 320 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 SLC36A1Q7Z2H8 476 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 DDOQ99489 341 aa13.34□□□□□ -0.27
VIM-208ENST00000497849 METTL8Q9H825 291 aaKnown RBP13.34□□□□□ -0.27
VIM-208ENST00000497849 MRPL15Q9P015 296 aaKnown RBP13.34□□□□□ -0.27
VIM-208ENST00000497849 M0R1W7 72 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 DCTN6O00399 190 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 ZNF92Q03936 586 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 MICAQ29983 383 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 ZNF770Q6IQ21 691 aaPredicted RBP13.33□□□□□ -0.28
VIM-208ENST00000497849 LIAT1Q6ZQX7 453 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 PTCHD4Q6ZW05 846 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 TMPRSS11FQ6ZWK6 438 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 WDR86Q86TI4 376 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 OR10G2Q8NGC3 310 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 GNPDA2Q8TDQ7 276 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 GIPC3Q8TF64 312 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 LRRC29Q8WV35 223 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 H1FXQ92522 213 aaKnown RBP13.33□□□□□ -0.28
VIM-208ENST00000497849 CENPNQ96H22 339 aaPredicted RBP13.33□□□□□ -0.28
VIM-208ENST00000497849 TSSK2Q96PF2 358 aa13.33□□□□□ -0.28
VIM-208ENST00000497849 PNRC2Q9NPJ4 139 aaKnown RBP13.33□□□□□ -0.28
VIM-208ENST00000497849 SF3B6Q9Y3B4 125 aaKnown RBP13.33□□□□□ -0.28
VIM-208ENST00000497849 A0A1W2PRX2 142 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 UNC119BA6NIH7 251 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 SAC3D1A6NKF1 404 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 C3orf84H3BNL1 204 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 FAHP16930 419 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 SDHAP31040 664 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 HOXD3P31249 432 aaPredicted RBP13.32□□□□□ -0.28
VIM-208ENST00000497849 SLC35A2P78381 396 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 ECH1Q13011 328 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 SNAI3Q3KNW1 292 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 ZBED5Q49AG3 693 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 LRRC10Q5BKY1 277 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 SLC18B1Q6NT16 456 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 LINC00346Q8IVM7 164 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 AQP11Q8NBQ7 271 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 OR2AE1Q8NHA4 323 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 RCC1LQ96I51 464 aaKnown RBP13.32□□□□□ -0.28
VIM-208ENST00000497849 OR5M11Q96RB7 305 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 FEVQ99581 238 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 ATF6BQ99941 703 aa13.32□□□□□ -0.28
VIM-208ENST00000497849 GGT3PA6NGU5 568 aa13.31□□□□□ -0.28
VIM-208ENST00000497849 CASQ2O14958 399 aaPredicted RBP13.31□□□□□ -0.28
VIM-208ENST00000497849 PTP4A3O75365 173 aa13.31□□□□□ -0.28
VIM-208ENST00000497849 GGT2P36268 569 aa13.31□□□□□ -0.28
VIM-208ENST00000497849 GSSP48637 474 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms