RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 ZNF684Q5T5D7 378 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 SFRP4Q6FHJ7 346 aaPredicted RBP13.37□□□□□ -0.27
LIME1-209ENST00000494776 KCTD20Q7Z5Y7 419 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 CATSPERDQ86XM0 798 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 SETD9Q8NE22 299 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 C19orf18Q8NEA5 215 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 OR5P3Q8WZ94 311 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 RORBQ92753 470 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 ITPKCQ96DU7 683 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 TMEM246Q9BRR3 403 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 ACOXLQ9NUZ1 547 aa13.37□□□□□ -0.27
LIME1-209ENST00000494776 A0A1B0GVI7 797 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 TMEM210A6NLX4 147 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 C3orf80F5H4A9 247 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 J3QLW9 94 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 J3QRE1 110 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 FSTL3O95633 263 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 CLIC3O95833 236 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 IFNA2P01563 188 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 IGLV3-1P01715 115 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 FAHP16930 419 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 ZNF19P17023 458 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 SRD5A1P18405 259 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 CD80P33681 288 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 SRP14P37108 136 aaKnown RBP13.36□□□□□ -0.27
LIME1-209ENST00000494776 PSMB10P40306 273 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 ACTA2P62736 377 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 ACTG2P63267 376 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 CSNK2BP67870 215 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 RAB40BQ12829 278 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 ZNF154Q13106 437 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 ZNF404Q494X3 552 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 KLHL22Q53GT1 634 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 CEP78Q5JTW2 689 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 ZBTB37Q5TC79 503 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 OGFRL1Q5TC84 451 aaPredicted RBP13.36□□□□□ -0.27
LIME1-209ENST00000494776 ZNF691Q5VV52 312 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 PLCXD3Q63HM9 321 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 MOB3CQ70IA8 216 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 DOK3Q7L591 496 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 NLRC3Q7RTR2 1065 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 WDR86Q86TI4 376 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 LRRC29Q8WV35 223 aa13.36□□□□□ -0.27
LIME1-209ENST00000494776 TRAV38-1A0A0B4J264 116 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 A0A0G2JMP0 313 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 A0A0X1KG70 313 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 H0YHG0 523 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 H3BSH0 61 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 LGALS8O00214 317 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 CDIPTO14735 213 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 CASQ2O14958 399 aaPredicted RBP13.35□□□□□ -0.27
LIME1-209ENST00000494776 SYT7O43581 403 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 NRASP01111 189 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 WNT2P09544 360 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 FAM157CP0CG43 387 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 THBS2P35442 1172 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 GPM6AP51674 278 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 OR12D2P58182 307 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 SLC34A1Q06495 639 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 GALEQ14376 348 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 CEACAM21Q3KPI0 293 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 CDONQ4KMG0 1287 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 DCAF12L2Q5VW00 463 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 DCDC5Q6ZRR9 648 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 LHFPL3Q86UP9 236 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 OR4M2Q8NGB6 313 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 OR8B3Q8NGG8 313 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 APH1BQ8WW43 257 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 RPL3LQ92901 407 aaKnown RBP13.35□□□□□ -0.27
LIME1-209ENST00000494776 NEIL1Q96FI4 390 aaPredicted RBP13.35□□□□□ -0.27
LIME1-209ENST00000494776 OR8B2Q96RD0 313 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 ALG8Q9BVK2 526 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 METTL17Q9H7H0 456 aaPredicted RBP13.35□□□□□ -0.27
LIME1-209ENST00000494776 RNPEPL1Q9HAU8 725 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 PLEKHA1Q9HB21 404 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 TRIM36Q9NQ86 728 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 MYRFQ9Y2G1 1151 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 MALRD1Q5VYJ5 2156 aa13.35□□□□□ -0.27
LIME1-209ENST00000494776 A0A1B0GTI1 187 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 OOEPA6NGQ2 149 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 ZNF732B4DXR9 585 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 F5H0A9 414 aaPredicted RBP13.34□□□□□ -0.27
LIME1-209ENST00000494776 HTR1AP08908 422 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 CPT2P23786 658 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 SEC61A1P61619 476 aaKnown RBP13.34□□□□□ -0.27
LIME1-209ENST00000494776 GNB2P62879 340 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 GNG3P63215 75 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 HOXA4Q00056 320 aaPredicted RBP13.34□□□□□ -0.27
LIME1-209ENST00000494776 IL18R1Q13478 541 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 SMN1Q16637 294 aaKnown RBP13.34□□□□□ -0.27
LIME1-209ENST00000494776 DMRTC1Q5HYR2 192 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 WDR38Q5JTN6 314 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 CLVS2Q5SYC1 327 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 WDR82Q6UXN9 313 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 C11orf53Q8IXP5 236 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 PRSS35Q8N3Z0 413 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 OR5A2Q8NGI9 324 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 OR52I1Q8NGK6 324 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 CNIH3Q8TBE1 160 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 HPSE2Q8WWQ2 592 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms