RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MED9Q9NWA0 146 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF878C9JN71 531 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 GLAP06280 429 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 RAB3AP20336 220 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 PSMB6P28072 239 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 MSX1P28360 303 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 CX3CR1P49238 355 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 RPS18P62269 152 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC25A53Q5H9E4 307 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 BRICD5Q6PL45 260 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC25A42Q86VD7 318 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 ARHGAP5-AS1Q96IT6 56 aa14.55□□□□□ -0.08
CCDC88B-210ENST00000494566 LINC01387J3KSC0 135 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 ETV2O00321 342 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 F10P00742 488 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 FGL1Q08830 312 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 NKAIN3Q8N8D7 197 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 OR5D14Q8NGL3 314 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 OR10C1Q96KK4 312 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 PRRT1Q99946 306 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 DNTTIP1Q9H147 329 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 LOC400499M0QZD8 3231 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 F5H5K5 113 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 OR2F2O95006 317 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 CD8AP01732 235 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 OR2F1Q13607 317 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 PLAC9Q5JTB6 97 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC25A47Q6Q0C1 308 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC22A24Q8N4F4 322 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF160Q9HCG1 818 aa14.54□□□□□ -0.08
CCDC88B-210ENST00000494566 NPIPB13A6NJU9 1138 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 NPIPB4C9JG80 1138 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC33A1O00400 549 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF17P17021 662 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 OR4A4PQ8NGN8 299 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 AQP3Q92482 292 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 EDAQ92838 391 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF837Q96EG3 531 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 C12orf57Q99622 126 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 PNRC2Q9NPJ4 139 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 ZNF701Q9NV72 531 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 GLS2Q9UI32 602 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 RAB22AQ9UL26 194 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 B3GALT1Q9Y5Z6 326 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 HS3ST3B1Q9Y662 390 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 SHANK1Q9Y566 2161 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 IGHV1-45A0A0A0MS14 117 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 OR5H15A6NDH6 313 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 CRHP06850 196 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 SLC6A9P48067 706 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 QRFPP83859 136 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 SCRN3Q0VDG4 424 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 RAB32Q13637 225 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 C1QL2Q7Z5L3 287 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 MITD1Q8WV92 249 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 DOCK7Q96N67 2140 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 OXGR1Q96P68 337 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 HDHD3Q9BSH5 251 aaPredicted RBP14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 RNF126Q9BV68 326 aa14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 ESRP2Q9H6T0 727 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-210ENST00000494566 KLF7O75840 302 aaPredicted RBP14.52□□□□□ -0.08
CCDC88B-210ENST00000494566 CD37P11049 281 aa14.52□□□□□ -0.08
CCDC88B-210ENST00000494566 DAOP14920 347 aa14.52□□□□□ -0.08
CCDC88B-210ENST00000494566 OR5AS1Q8N127 324 aa14.52□□□□□ -0.08
CCDC88B-210ENST00000494566 FADS6Q8N9I5 356 aa14.52□□□□□ -0.08
CCDC88B-210ENST00000494566 IGLV3-32A0A0A0MS00 114 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 A0A1B0GW55 424 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 LRP3O75074 770 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 TPPPO94811 219 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DBHP09172 617 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DUX4L2P0CJ85 424 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DUX4L3P0CJ86 424 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DUX4L4P0CJ87 422 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DUX4L5P0CJ88 424 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DUX4L6P0CJ89 424 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DUX4L7P0CJ90 424 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 COX6A1P12074 109 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 SERPINA2P20848 420 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 ANKRD55Q3KP44 614 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 OR6X1Q8NH79 312 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 PIK3IP1Q96FE7 263 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 ALX4Q9H161 411 aaPredicted RBP14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 C5orf66Q9H5L9 145 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 ZNF581Q9P0T4 197 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DUX4Q9UBX2 424 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 PURGQ9UJV8 347 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 MRPS28Q9Y2Q9 187 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 DIDO1Q9BTC0 2240 aaKnown RBP14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 A0A0G2JMM0 328 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 A0A1W2PPB8 328 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 A0A1W2PRS3 328 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 PMS2P1A4D2B8 440 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 AQP7P3A6NL99 342 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 KIR3DP1A8MWS1 328 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 CD74P04233 296 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 SPP1P10451 314 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 ASCL1P50553 236 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 CHAF1BQ13112 559 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 PDCD1Q15116 288 aa14.52□□□□□ -0.09
CCDC88B-210ENST00000494566 RPL7L1Q6DKI1 246 aaKnown RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 238.7 ms