RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MFSD7Q6UXD7 560 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PAMR1Q6UXH9 720 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 LRRN1Q6UXK5 716 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 HSDL2Q6YN16 418 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF730Q6ZMV8 503 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF836Q6ZNA1 936 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF620Q6ZNG0 422 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 C1orf186Q6ZWK4 172 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SSX7Q7RTT5 188 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SSX6Q7RTT6 188 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF720Q7Z2F6 126 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 IFNEQ86WN2 208 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ANGPTL5Q86XS5 388 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 VRK2Q86Y07 508 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CBLN2Q8IUK8 224 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZBTB8OSQ8IWT0 167 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 BOD1L2Q8IYS8 172 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 DEFB107AQ8IZN7 70 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PGAM4Q8N0Y7 254 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MS4A15Q8N5U1 240 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 EIF4E3Q8N5X7 224 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CD177Q8N6Q3 437 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RNF148Q8N7C7 305 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF283Q8N7M2 679 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CYB561A3Q8NBI2 242 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CLEC1AQ8NC01 280 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR10W1Q8NGF6 305 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR2D3Q8NGH3 330 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR52E1Q8NGJ3 308 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR13D1Q8NGV5 346 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR6K3Q8NGY3 331 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR5J2Q8NH18 312 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR2V1Q8NHB1 315 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR5K1Q8NHB7 308 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OCC1Q8TAD7 63 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ITFG1Q8TB96 612 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 GNPDA2Q8TDQ7 276 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RXFP4Q8TDU9 374 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PAQR8Q8TEZ7 354 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF431Q8TF32 576 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TSEN15Q8WW01 171 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RLN3Q8WXF3 142 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ACOT12Q8WYK0 555 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TMBIM1Q969X1 311 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 NABP1Q96AH0 204 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MRGPRFQ96AM1 343 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 PPWD1Q96BP3 646 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ULK4Q96C45 1275 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RAB3CQ96E17 227 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MRPS24Q96EL2 167 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CMTM7Q96FZ5 175 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 C5orf30Q96GV9 206 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CXorf58Q96LI9 332 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 HYLS1Q96M11 299 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 Q96MT0 163 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM56Q96MV1 263 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TGM7Q96PF1 710 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RCHY1Q96PM5 261 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RBP7Q96R05 134 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CNN2Q99439 309 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TEAD3Q99594 435 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RBBP8Q99708 897 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SMR3AQ99954 134 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 APOL4Q9BPW4 351 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 C11orf70Q9BRQ4 267 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 NDUFAF3Q9BU61 184 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 YTHDF1Q9BYJ9 559 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ANKRD60Q9BZ19 345 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RAB34Q9BZG1 259 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF436Q9C0F3 470 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ZBP1Q9H171 429 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OR2AG1Q9H205 316 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 DCSTAMPQ9H295 470 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 VCX2Q9H322 139 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 LIME1Q9H400 295 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CWH43Q9H720 699 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ANKHQ9HCJ1 492 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 VAT1LQ9HCJ6 419 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 CCNB1IP1Q9NPC3 277 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ADAP2Q9NPF8 381 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 NGBQ9NPG2 151 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ISYNA1Q9NPH2 558 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MRPL17Q9NRX2 175 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 GPR173Q9NS66 373 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 LYARQ9NX58 379 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SLC17A7Q9P2U7 560 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 OPTCQ9UBM4 332 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 METTL1Q9UBP6 276 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SEC14L3Q9UDX4 400 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 LGALS13Q9UHV8 139 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TBC1D24Q9ULP9 559 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ING4Q9UNL4 249 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 SLC7A11Q9UPY5 501 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 ETV7Q9Y603 341 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM56-RWDD3S4R434 201 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 LAMA4Q16363 1823 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 TDRD15B5MCY1 1934 aaKnown RBP1.67□□□□□ -2.14
HMGB1-208ENST00000490788 MYH13Q9UKX3 1938 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 RYR3Q15413 4870 aa1.67□□□□□ -2.14
HMGB1-208ENST00000490788 C2orf16Q68DN1 1984 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms