RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 H0Y980 276 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 SMKR1H3BMG3 65 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 RAD51CO43502 376 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 CDC40O60508 579 aaKnown RBP eCLIP3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 EIF3GO75821 320 aaKnown RBP eCLIP3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 ATP6V1G2O95670 118 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 OR8U9P0C7N5 309 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 LIPCP11150 499 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 IGFBP3P17936 291 aaPredicted RBP3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 RAB4AP20338 218 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 RAB5AP20339 215 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 ARL2P36404 184 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 HCCSP53701 268 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 SUB1P53999 127 aaKnown RBP eCLIP3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 RHOAP61586 193 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 CYP24A1Q07973 514 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 MGAT3Q09327 533 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 TSPAN31Q12999 210 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 EBI3Q14213 229 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 TMEM249Q2WGJ8 235 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 AKIRIN2Q53H80 203 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 ACTBL2Q562R1 376 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 GCSAMLQ5JQS6 135 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 FRMPD2BQ6IN97 320 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 DRAM2Q6UX65 266 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 C12orf54Q6X4T0 127 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 SLC13A5Q86YT5 568 aaPredicted RBP3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 PIANPQ8IYJ0 282 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 HS3ST5Q8IZT8 346 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 CA13Q8N1Q1 262 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 OR4K2Q8NGD2 314 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 OR10G9Q8NGN4 311 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 OR8U1Q8NH10 309 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 MCOLN3Q8TDD5 553 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 FLYWCH2Q96CP2 140 aaKnown RBP3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 RCN3Q96D15 328 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 ADTRPQ96IZ2 230 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 TAAR1Q96RJ0 339 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 GPR21Q99679 349 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 AGMATQ9BSE5 352 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 PLA2G2FQ9BZM2 168 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 CCL28Q9NRJ3 127 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 PAQR5Q9NXK6 330 aaPredicted RBP3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 BABAM2Q9NXR7 383 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 TFR2Q9UP52 801 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 PSG11Q9UQ72 335 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 SLC22A13Q9Y226 551 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 TRAPPC4Q9Y296 219 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 HEBP2Q9Y5Z4 205 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 V9GYQ6 96 aa3.05□□□□□ -1.92
HMGB1P38-201ENST00000490557 RAB3GAP2Q9H2M9 1393 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 KIR2DS1A0A191URI9 304 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 A0A1B0GVI7 797 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 OR5K4A6NMS3 321 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 C9J4A7 227 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 ANKRD63C9JTQ0 380 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 F6UB75 175 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 M0QZ92 97 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 NME4O00746 187 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 SLC31A1O15431 190 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 ERI3O43414 337 aaKnown RBP3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 HPGDSO60760 199 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 MED6O75586 246 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 VAMP5O95183 116 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 HIST1H1CP16403 213 aaKnown RBP3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 PVALBP20472 110 aaPredicted RBP3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 PRPS1L1P21108 318 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 CBX5P45973 191 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 NMUP48645 174 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 TAS2R39P59534 338 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 PFN3P60673 137 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 ARF6P62330 175 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 SLC25A11Q02978 314 aaKnown RBP3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 TWF1Q12792 350 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 SMARCB1Q12824 385 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 NAB1Q13506 487 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 KIR2DS1Q14954 304 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 C16orf72Q14CZ0 275 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 SGCAQ16586 387 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 POU2AF1Q16633 256 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 VAX1Q5SQQ9 334 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 UBE2UQ5VVX9 321 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 NIPAL1Q6NVV3 410 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 USP50Q70EL3 339 aaPredicted RBP3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 TMEM135Q86UB9 458 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 C2orf73Q8N5S3 287 aaPredicted RBP3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 HSD17B11Q8NBQ5 300 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 NPBQ8NG41 125 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 OR8G5Q8NG78 346 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 OR1N2Q8NGR9 330 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 DYNC2LI1Q8TCX1 351 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 PPWD1Q96BP3 646 aaKnown RBP3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 MED8Q96G25 268 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 FOPNLQ96NB1 174 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 OR51B6Q9H340 312 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 SRMSQ9H3Y6 488 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 DHX35Q9H5Z1 703 aaKnown RBP3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 RDH14Q9HBH5 336 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 EXD2Q9NVH0 621 aa3.04□□□□□ -1.92
HMGB1P38-201ENST00000490557 ACOT9Q9Y305 439 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms