RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 DBTP11182 482 aaKnown RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 GIFP27352 417 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 DCTDP32321 178 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 ADMP35318 185 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 CAPGP40121 348 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 MDH2P40926 338 aaKnown RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 GMFBP60983 142 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 BTG1P62324 171 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 GNB2P62879 340 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 RAB40BQ12829 278 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 MRPL28Q13084 256 aaKnown RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 RIN1Q13671 783 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 MICBQ29980 383 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 TP53I3Q53FA7 332 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 TMEM244Q5VVB8 128 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 PRAMEF6Q5VXH4 476 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 FOXB2Q5VYV0 432 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 FIP1L1Q6UN15 594 aaKnown RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 BTNL3Q6UXE8 466 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 COLCA1Q6ZS62 124 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 ENTHD1Q8IYW4 607 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 ZNF420Q8TAQ5 688 aaPredicted RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 ZNF671Q8TAW3 534 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 DVL3Q92997 716 aaPredicted RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 YIPF5Q969M3 257 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 ITFG2Q969R8 447 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 SGK3Q96BR1 496 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 TECTBQ96PL2 329 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 AMELYQ99218 206 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 SLC29A1Q99808 456 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 MRI1Q9BV20 369 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 ALG8Q9BVK2 526 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 ZNF665Q9H7R5 613 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 AMBNQ9NP70 447 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 GPR84Q9NQS5 396 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 INPP5EQ9NRR6 644 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 C1orf123Q9NWV4 160 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 RNF7Q9UBF6 113 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 COPS3Q9UNS2 423 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 PPIAL4AQ9Y536 164 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 CSMD2Q7Z408 3487 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 PDZD2O15018 2839 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 IGHV4-61A0A0C4DH41 118 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 A0A0G2JMP0 313 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 A0A0U1RQV5 110 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 A0A0X1KG70 313 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 TMEM210A6NLX4 147 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 H0YL77 283 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 P2RY10O00398 339 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 SLC16A6O15403 523 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 DHRS3O75911 302 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 NRASP01111 189 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 ADH4P08319 380 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 OTX1P32242 354 aaPredicted RBP6.8□□□□□ -1.32
USP40-216ENST00000485943 GPM6AP51674 278 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 CAPZA1P52907 286 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 RIPPLY3P57055 190 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 GNG3P63215 75 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 FAM3AP98173 230 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 ROM1Q03395 351 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 ZNF91Q05481 1191 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 PRDX4Q13162 271 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 CNN3Q15417 329 aaKnown RBP6.8□□□□□ -1.32
USP40-216ENST00000485943 CEP78Q5JTW2 689 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 DCAF12L2Q5VW00 463 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 LIPNQ5VXI9 398 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 FAHD2BQ6P2I3 314 aaPredicted RBP6.8□□□□□ -1.32
USP40-216ENST00000485943 LHFPL3Q86UP9 236 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 KRTAP1-3Q8IUG1 177 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 CCDC54Q8NEL0 328 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 DEFB108BQ8NET1 73 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 OR4M2Q8NGB6 313 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 OR13C3Q8NGS6 347 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 CLDND2Q8NHS1 167 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 CPNE2Q96FN4 548 aaPredicted RBP6.8□□□□□ -1.32
USP40-216ENST00000485943 FAHD2AQ96GK7 314 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 C4orf36Q96KX1 117 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 SIGLEC11Q96RL6 698 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 MBOAT4Q96T53 435 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 C7orf69Q9H7B7 122 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 RNPEPL1Q9HAU8 725 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 ERVK-18Q9QC07 812 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 MIOXQ9UGB7 285 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 NUFIP1Q9UHK0 495 aaKnown RBP6.8□□□□□ -1.32
USP40-216ENST00000485943 CDC42EP3Q9UKI2 254 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 BLOC1S6Q9UL45 172 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 POLDIP2Q9Y2S7 368 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 KLHDC2Q9Y2U9 406 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 EXOSC1Q9Y3B2 195 aaKnown RBP6.8□□□□□ -1.32
USP40-216ENST00000485943 PCDHGB5Q9Y5G0 923 aa6.8□□□□□ -1.32
USP40-216ENST00000485943 hCG_38984A0A1B0GV85 526 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 FAM230AA0A1W2PPH8 454 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 EFCAB10A6NFE3 127 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 OR5B21A6NL26 309 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 INAFM1C9JVW0 142 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 H0YAE9 185 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 TMEM178BH3BS89 294 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 MAGEB4O15481 346 aaPredicted RBP6.79□□□□□ -1.32
USP40-216ENST00000485943 ZNF205O95201 554 aa6.79□□□□□ -1.32
USP40-216ENST00000485943 CD2P06729 351 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms