RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 OR2Z1Q8NG97 314 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 OR8B12Q8NGG6 310 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 OR56B2PQ8NGI1 322 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 OR2T27Q8NH04 317 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 ZNF420Q8TAQ5 688 aaPredicted RBP4.78□□□□□ -1.64
CUX1-208ENST00000485792 RPS4Y2Q8TD47 263 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 RAB1CQ92928 201 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 SEH1LQ96EE3 360 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 RAB3IPQ96QF0 476 aaPredicted RBP4.78□□□□□ -1.64
CUX1-208ENST00000485792 IL4I1Q96RQ9 567 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 COPS4Q9BT78 406 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 C9orf16Q9BUW7 83 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 JAM3Q9BX67 310 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 TEX12Q9BXU0 123 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 KRTAP4-8Q9BYQ9 185 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 NARFLQ9H6Q4 476 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 ZNF665Q9H7R5 613 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 PATZ1Q9HBE1 687 aaKnown RBP4.78□□□□□ -1.64
CUX1-208ENST00000485792 CENPMQ9NSP4 180 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 DECR2Q9NUI1 292 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 MBNL3Q9NUK0 354 aaKnown RBP4.78□□□□□ -1.64
CUX1-208ENST00000485792 FAM118AQ9NWS6 357 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 KIF17Q9P2E2 1029 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 KAAG1Q9UBP8 84 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 CTSZQ9UBR2 303 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 NKX1-2Q9UD57 310 aaPredicted RBP4.78□□□□□ -1.64
CUX1-208ENST00000485792 CDC42EP3Q9UKI2 254 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 PPP1R3CQ9UQK1 317 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 ZNF281Q9Y2X9 895 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 SOX21Q9Y651 276 aaPredicted RBP4.78□□□□□ -1.64
CUX1-208ENST00000485792 PKD1L1Q8TDX9 2849 aa4.78□□□□□ -1.64
CUX1-208ENST00000485792 TRAV20A0A0B4J274 112 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 LOC100130705A0A1B0GUX0 176 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 A0A1W2PQL4 384 aaPredicted RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 TMEM82A0PJX8 343 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 SRRM5B3KS81 715 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 TRAPPC2LH3BP13 241 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 PPIHO43447 177 aaKnown RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 PLPP2O43688 288 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 ENTPD6O75354 484 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 CLIC3O95833 236 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 TGFAP01135 160 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 MSMBP08118 114 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 H2BFMP0C1H6 154 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 FAM157CP0CG43 387 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 PPIAL4GP0DN37 164 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 CA6P23280 308 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 TNFSF4P23510 183 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 ZFP36P26651 326 aaKnown RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 PEX2P28328 305 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 MDH2P40926 338 aaKnown RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 MTNR1AP48039 350 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 SRP9P49458 86 aaKnown RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 CDC42P60953 191 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 CXCR4P61073 352 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 BTG1P62324 171 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 MVKQ03426 396 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 GABPB1Q06547 395 aaPredicted RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 ZSCAN26Q16670 478 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 CDONQ4KMG0 1287 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 FAM120AOSQ5T036 256 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 ATPAF1Q5TC12 328 aaPredicted RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 OGFRL1Q5TC84 451 aaPredicted RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 TEX36Q5VZQ5 186 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 LPCAT4Q643R3 524 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 ZNF322Q6U7Q0 402 aaPredicted RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 ZBTB49Q6ZSB9 765 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 MRPL21Q7Z2W9 205 aaKnown RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 KCTD20Q7Z5Y7 419 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 CATSPERDQ86XM0 798 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 ENTHD1Q8IYW4 607 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 GCSAMQ8N6F7 178 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 ZNF485Q8NCK3 441 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 BHLHE23Q8NDY6 225 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 BVESQ8NE79 360 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 CSNK2A3Q8NEV1 391 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 THEM6Q8WUY1 208 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 NRG4Q8WWG1 115 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 OR5P3Q8WZ94 311 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 CCL17Q92583 94 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 RORBQ92753 470 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 RFKQ969G6 155 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 REEP6Q96HR9 211 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 PLEKHA8Q96JA3 519 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 CNN2Q99439 309 aaKnown RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 MROQ9BYG7 248 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 RNPEPL1Q9HAU8 725 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 C8orf4Q9NR00 106 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 DNAJC27Q9NZQ0 273 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 OPN4Q9UHM6 478 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 LAMP5Q9UJQ1 280 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.77□□□□□ -1.65
CUX1-208ENST00000485792 NOP16Q9Y3C1 178 aaKnown RBP4.77□□□□□ -1.65
CUX1-208ENST00000485792 RHBDD3Q9Y3P4 386 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 PCDHGB5Q9Y5G0 923 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 MPC1Q9Y5U8 109 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 V9GYS6 101 aa4.77□□□□□ -1.65
CUX1-208ENST00000485792 TMEM269A0A1B0GVZ9 245 aa4.76□□□□□ -1.65
CUX1-208ENST00000485792 CEACAM18A8MTB9 384 aa4.76□□□□□ -1.65
CUX1-208ENST00000485792 J3QLI3 93 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms