RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CDKN2DP55273 166 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 DAOAP59103 153 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 OSTNP61366 133 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 SNRPD2P62316 118 aaKnown RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 DEFA5Q01523 94 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 C17orf67Q0P5P2 114 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 OR4D1Q15615 310 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 GSG1Q2KHT4 349 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 EXOC3L2Q2M3D2 409 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 LGALSLQ3ZCW2 172 aaPredicted RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 PYCR3Q53H96 274 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 Q5BKY6 102 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 CARD16Q5EG05 197 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 NKAIN2Q5VXU1 208 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 PTRHD1Q6GMV3 140 aaKnown RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 RAET1GQ6H3X3 334 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 C5orf46Q6UWT4 87 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 IL34Q6ZMJ4 242 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 NDUFAF7Q7L592 441 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 DCXRQ7Z4W1 244 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 GOLGA7Q7Z5G4 137 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 HS3ST5Q8IZT8 346 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 COMMD1Q8N668 190 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 INO80EQ8NBZ0 244 aaPredicted RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 OR8D4Q8NGM9 314 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 ZNF671Q8TAW3 534 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 GLYATL2Q8WU03 294 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 EEF1AKMT1Q8WVE0 214 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 MRPS31Q92665 395 aaKnown RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 OSTF1Q92882 214 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 ARL11Q969Q4 196 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 MARC2Q969Z3 335 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 UPRTQ96BW1 309 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 SLC25A36Q96CQ1 311 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 HAVCR1Q96D42 359 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 RAB3CQ96E17 227 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 C7orf34Q96L11 122 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 RBP7Q96R05 134 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 IL4I1Q96RQ9 567 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 S100A13Q99584 98 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 PAXXQ9BUH6 204 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 FAIM2Q9BWQ8 316 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 TSSK6Q9BXA6 273 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 BEX2Q9BXY8 128 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 DEFB126Q9BYW3 111 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 POLR2J3Q9H1A7 115 aaKnown RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 MIXL1Q9H2W2 232 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 SMDT1Q9H4I9 107 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 TUBA4BQ9H853 241 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 SDHAF3Q9NRP4 125 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 PIGVQ9NUD9 493 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 VNN3Q9NY84 501 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 TAS2R5Q9NYW4 299 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 MYEF2Q9P2K5 600 aaKnown RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 GALPQ9UBC7 116 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 UXTQ9UBK9 157 aaPredicted RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 FBXL3Q9UKT7 428 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 LSM2Q9Y333 95 aaKnown RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 PCYT1BQ9Y5K3 369 aaPredicted RBP4.31□□□□□ -1.72
USP40-213ENST00000483216 CLCA3PQ9Y6N3 262 aa4.31□□□□□ -1.72
USP40-213ENST00000483216 NPIPA5A0A0B4J1W7 369 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 TRAV1-2A0A0B4J238 106 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 CXorf51AA0A1B0GTR3 108 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 TRABD2BA6NFA1 517 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 NPIPA5E9PKD4 350 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 TSTD3H0UI37 97 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 GABARAPH6UMI1 98 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 HAS3O00219 553 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 MANBAO00462 879 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 PIRO00625 290 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 OR2A4O95047 310 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 GJB5O95377 273 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 MT-ND4LP03901 98 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 IQCF3P0C7M6 154 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ZNF286BP0CG31 522 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 PET100P0DJ07 73 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ICAM2P13598 275 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 PGAM2P15259 253 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ARF4P18085 180 aaPredicted RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 CNR1P21554 472 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 S100A2P29034 98 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ADORA2BP29275 332 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 MAT2AP31153 395 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 MDH2P40926 338 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 CSNK1EP49674 416 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 SLC25A1P53007 311 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ERVPABLB-1P60509 514 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 VLDLRP98155 873 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 DDX39BQ13838 428 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 GPR176Q14439 515 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ZMYND11Q15326 602 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 SSX1Q16384 188 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 SSX2Q16385 188 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 ZSWIM7Q19AV6 140 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 PAN3Q58A45 887 aaKnown RBP4.3□□□□□ -1.72
USP40-213ENST00000483216 ZNF311Q5JNZ3 666 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 PRAMEF7Q5VXH5 474 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 LIPKQ5VXJ0 399 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 C12orf73Q69YU5 71 aa4.3□□□□□ -1.72
USP40-213ENST00000483216 C22orf42Q6IC83 251 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms