RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CANT1Q8WVQ1 401 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 OTULINQ96BN8 352 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 OR8B2Q96RD0 313 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 INTS14Q96SY0 518 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC6A7Q99884 636 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 TMEM246Q9BRR3 403 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 ADAT1Q9BUB4 502 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 TOR3AQ9H497 397 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 SP140LQ9H930 580 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 FN3KRPQ9HA64 309 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF556Q9HAH1 456 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 NTN4Q9HB63 628 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 MMP26Q9NRE1 261 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 MRPL15Q9P015 296 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 PPIAL4AQ9Y536 164 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 INSIG2Q9Y5U4 225 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 AUP1Q9Y679 476 aa5.68□□□□□ -1.5
CCDC88A-213ENST00000476903 FAM183AA6NL82 134 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 ANKRD30BLA7E2S9 258 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 PRR23D1E9PI22 279 aaPredicted RBP5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 FAM20BO75063 409 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 GLCEO94923 617 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 HMGN1P05114 100 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 ANXA2P07355 339 aaKnown RBP5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 PRR23D2P0DMB1 279 aaPredicted RBP5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC2A1P11166 492 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 OSMP13725 252 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 ANXA8P13928 327 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 CFL1P23528 166 aaKnown RBP5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 POU1F1P28069 291 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 DDOSTP39656 456 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 PMELP40967 661 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 ACTG1P63261 375 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 FLOT2Q14254 428 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 KCNJ8Q15842 424 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 LINC01590Q5TEZ4 76 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 PRAMEF6Q5VXH4 476 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 LRRN1Q6UXK5 716 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 C12orf54Q6X4T0 127 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 DCDC5Q6ZRR9 648 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 RHOUQ7L0Q8 258 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 DPY19L4Q7Z388 723 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 TMEM179BQ7Z7N9 219 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 SPATA24Q86W54 205 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 IQCF2Q8IXL9 164 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 IQCF1Q8N6M8 205 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 SPERTQ8NA61 448 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 DEFB108BQ8NET1 73 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 OR56B2PQ8NGI1 322 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 RNF133Q8WVZ7 376 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 SPSB4Q96A44 273 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 TEX12Q9BXU0 123 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 OR51V1Q9H2C8 321 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 MED20Q9H944 212 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 MARCH7Q9H992 704 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 TMEM165Q9HC07 324 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 TRIM36Q9NQ86 728 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 UFSP2Q9NUQ7 469 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 C14orf119Q9NWQ9 140 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 NUP50Q9UKX7 468 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 N6AMT1Q9Y5N5 214 aa5.67□□□□□ -1.5
CCDC88A-213ENST00000476903 FBN3Q75N90 2809 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 TRBV23-1A0A0A0MS06 115 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 IGHV2-70DA0A0C4DH43 119 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 TCRBV3S1A0A5B6 114 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 C5orf63A6NC05 138 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 A6NLC8 198 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 PHYHO14832 338 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 FKBP6O75344 327 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 DNAJC8O75937 253 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 PTBP3O95758 552 aaKnown RBP5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 LYNP07948 512 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 H2BFMP0C1H6 154 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 PPIAL4GP0DN37 164 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 ANOS1P23352 680 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 OPRL1P41146 370 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 PITPNBP48739 271 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 NPY4RP50391 375 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 ZNF121P58317 390 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 CBX1P83916 185 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 CDK5Q00535 292 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 PAX8Q06710 450 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 GINS1Q14691 196 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 MPPED2Q15777 294 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 SNCBQ16143 134 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 TIGD6Q17RP2 521 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 KLHL12Q53G59 568 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC35D3Q5M8T2 416 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 FAM201AQ5SY85 155 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 PLBD1Q6P4A8 553 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 RBMS3Q6XE24 437 aaKnown RBP5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 FAM57BQ71RH2 274 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 SLC16A9Q7RTY1 509 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 TIGD4Q8IY51 512 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 HS3ST5Q8IZT8 346 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 OR52H1Q8NGJ2 320 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 OR8S1Q8NH09 359 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 RAB40AQ8WXH6 277 aa5.66□□□□□ -1.5
CCDC88A-213ENST00000476903 DNAJC9Q8WXX5 260 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms