RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SLC13A4Q9UKG4 626 aa3.66□□□□□ -1.82
USP4-209ENST00000475873 LRP12Q9Y561 859 aa3.66□□□□□ -1.82
USP4-209ENST00000475873 A0A0G2JPF8 293 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 A0A0J9YWU9 116 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 KRTAP9-6A0A140TA67 174 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 HTR3EA5X5Y0 456 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 NPIPB13A6NJU9 1138 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 SERPINE3A8MV23 424 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 HNRNPCL2B2RXH8 293 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 HNRNPCL3B7ZW38 293 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 NPIPB4C9JG80 1138 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 CDIPTO14735 213 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 HSPA12AO43301 675 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 AKR7A2O43488 359 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 XRCC3O43542 346 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 HNRNPCL1O60812 293 aaKnown RBP3.65□□□□□ -1.83
USP4-209ENST00000475873 IGLV1-51P01701 117 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 IGHG2P01859 326 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 FGF4P08620 206 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 SPARCP09486 303 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 OR8U8P0C7N1 319 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 RBMY1CP0DJD4 496 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 INAFM2P0DMQ5 153 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 HNRNPCL4P0DMR1 293 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 MYL2P10916 166 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 PSG2P11465 335 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 IL12AP29459 219 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 SERPINB9P50453 376 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 ARPC4P59998 168 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 CBX1P83916 185 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 ZNF616Q08AN1 781 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 DYNC1I2Q13409 638 aaKnown RBP3.65□□□□□ -1.83
USP4-209ENST00000475873 FOXE3Q13461 319 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 AQP6Q13520 282 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 FHL1Q13642 323 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 SNAPC1Q16533 368 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 UTF1Q5T230 341 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 MINOS1Q5TGZ0 78 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 GPR139Q6DWJ6 353 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 C8orf74Q6P047 294 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 TEX38Q6PEX7 206 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 DHRS4L2Q6PKH6 230 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 CORO6Q6QEF8 472 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 TIFABQ6ZNK6 161 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 PGAP1Q75T13 922 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 DHDDSQ86SQ9 333 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 ZBTB46Q86UZ6 589 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 RBM45Q8IUH3 476 aaKnown RBP3.65□□□□□ -1.83
USP4-209ENST00000475873 SLC35F6Q8N357 371 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 LRRC75AQ8NAA5 344 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 OR56B2PQ8NGI1 322 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 OR4D11Q8NGI4 311 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 OR1N2Q8NGR9 330 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 PFN4Q8NHR9 129 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 AGR3Q8TD06 166 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 TESCQ96BS2 214 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 MED30Q96HR3 178 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 AKR1E2Q96JD6 320 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 C18orf15Q96N68 181 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 OR5B12Q96R08 314 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 PRSS27Q9BQR3 290 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 OVOL2Q9BRP0 275 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 ALG12Q9BV10 488 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 TMED9Q9BVK6 235 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 PARD6BQ9BYG5 372 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 NUF2Q9BZD4 464 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 SLC22A4Q9H015 551 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 ALX4Q9H161 411 aaPredicted RBP3.65□□□□□ -1.83
USP4-209ENST00000475873 WFDC10AQ9H1F0 79 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 KLK15Q9H2R5 256 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 SP140LQ9H930 580 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 BCL2L10Q9HD36 194 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 ASIC5Q9NY37 505 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 USE1Q9NZ43 259 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 ATPIF1Q9UII2 106 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 ZNF180Q9UJW8 692 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 AURKCQ9UQB9 309 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 KLK5Q9Y337 293 aaPredicted RBP3.65□□□□□ -1.83
USP4-209ENST00000475873 IFT52Q9Y366 437 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 LHFPL6Q9Y693 200 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 SIRT4Q9Y6E7 314 aaPredicted RBP3.65□□□□□ -1.83
USP4-209ENST00000475873 MINOS1-NBL1R4GNA1 71 aa3.65□□□□□ -1.83
USP4-209ENST00000475873 IGHV2-26A0A0B4J1V2 119 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 A0A1W2PPM1 405 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 OR2AT4A6NND4 320 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 M0R3H8 397 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 BHLHE40O14503 412 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 CHP2O43745 196 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 PLIN3O60664 434 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 MMP23AO75900 390 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 IGHG4P01861 327 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 TFAP2AP05549 437 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 UMPSP11172 480 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 PIPP12273 146 aaPredicted RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 PSMB8P28062 276 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 SDHAP31040 664 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 MDH1P40925 334 aaKnown RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 GABRA2P47869 451 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 SLC9A3P48764 834 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 RGS8P57771 180 aaPredicted RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms