RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 GAL3ST1Q99999 423 aa12.86□□□□□ -0.35
SDC3-203ENST00000471567 ZNF665Q9H7R5 613 aa12.86□□□□□ -0.35
SDC3-203ENST00000471567 YAE1D1Q9NRH1 226 aa12.86□□□□□ -0.35
SDC3-203ENST00000471567 PLCXD1Q9NUJ7 323 aa12.86□□□□□ -0.35
SDC3-203ENST00000471567 UFSP2Q9NUQ7 469 aa12.86□□□□□ -0.35
SDC3-203ENST00000471567 RNF7Q9UBF6 113 aa12.86□□□□□ -0.35
SDC3-203ENST00000471567 PIGLQ9Y2B2 252 aa12.86□□□□□ -0.35
SDC3-203ENST00000471567 PPIAL4EA0A075B759 164 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 TMEM210A6NLX4 147 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 A8MV72 311 aaPredicted RBP12.85□□□□□ -0.35
SDC3-203ENST00000471567 B4DSR2 109 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 PPIAL4DF5H284 164 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 SYT7O43581 403 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 ATP6V1G2O95670 118 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 CYB5R3P00387 301 aaPredicted RBP12.85□□□□□ -0.35
SDC3-203ENST00000471567 IGHV2-5P01817 119 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 GRPP07492 148 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 UBCP0CG48 685 aaKnown RBP12.85□□□□□ -0.35
SDC3-203ENST00000471567 LIMS3P0CW19 117 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 LIMS4P0CW20 117 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 PPIAL4FP0DN26 164 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 PIPP12273 146 aaPredicted RBP12.85□□□□□ -0.35
SDC3-203ENST00000471567 ZNF12P17014 697 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 KIR3DL2P43630 455 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 ZMYND11Q15326 602 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 FAM76BQ5HYJ3 339 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 TMEM244Q5VVB8 128 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 FAM166AQ6J272 317 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 KLHL36Q8N4N3 616 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 OR1M1Q8NGA1 313 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 RNF170Q96K19 258 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 TLNRD1Q9H1K6 362 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 PPP1R3EQ9H7J1 279 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 C1orf123Q9NWV4 160 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 CNOT2Q9NZN8 540 aaKnown RBP12.85□□□□□ -0.35
SDC3-203ENST00000471567 FRRS1LQ9P0K9 344 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 DIMT1Q9UNQ2 313 aaKnown RBP12.85□□□□□ -0.35
SDC3-203ENST00000471567 PPIAL4AQ9Y536 164 aa12.85□□□□□ -0.35
SDC3-203ENST00000471567 EFCAB10A6NFE3 127 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 A6NLC8 198 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 TGFAP01135 160 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 ISG15P05161 165 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 RPSAP08865 295 aaKnown RBP12.84□□□□□ -0.35
SDC3-203ENST00000471567 FAHP16930 419 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 ZNF16P17020 682 aaPredicted RBP12.84□□□□□ -0.35
SDC3-203ENST00000471567 CFHR2P36980 270 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 HSPA13P48723 471 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 CSNK2BP67870 215 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 ZNF154Q13106 437 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 HNRNPA0Q13151 305 aaKnown RBP12.84□□□□□ -0.35
SDC3-203ENST00000471567 MED21Q13503 144 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 CEACAM21Q3KPI0 293 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 CLVS2Q5SYC1 327 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 TMEM42Q69YG0 159 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 LAIR2Q6ISS4 152 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 WDR86Q86TI4 376 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 C11orf53Q8IXP5 236 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 OR5A2Q8NGI9 324 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 HPSE2Q8WWQ2 592 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 GGHQ92820 318 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 C10orf35Q96D05 121 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 TMEM80Q96HE8 168 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 ISG20L2Q9H9L3 353 aaKnown RBP12.84□□□□□ -0.35
SDC3-203ENST00000471567 TMEM165Q9HC07 324 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 TMEM160Q9NX00 188 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 PCDHB10Q9UN67 800 aa12.84□□□□□ -0.35
SDC3-203ENST00000471567 CAB39Q9Y376 341 aaPredicted RBP12.84□□□□□ -0.35
SDC3-203ENST00000471567 EXOSC1Q9Y3B2 195 aaKnown RBP12.84□□□□□ -0.35
SDC3-203ENST00000471567 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.83□□□□□ -0.36
SDC3-203ENST00000471567 LOC107986453A0A1B0GWG9 222 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 OR5B21A6NL26 309 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 FAM157AC9JC47 383 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 LMX1BO60663 402 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 NRASP01111 189 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 LHBP01229 141 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 MYL12AP19105 171 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 THBS2P35442 1172 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 RBMXP38159 391 aaKnown RBP12.83□□□□□ -0.36
SDC3-203ENST00000471567 TGM4P49221 684 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 ETV1P50549 477 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 GBX2P52951 348 aaPredicted RBP12.83□□□□□ -0.36
SDC3-203ENST00000471567 NANOS3P60323 173 aaKnown RBP12.83□□□□□ -0.36
SDC3-203ENST00000471567 GNG3P63215 75 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 ALKBH1Q13686 389 aaKnown RBP12.83□□□□□ -0.36
SDC3-203ENST00000471567 ODF4Q2M2E3 257 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 TMPRSS11AQ6ZMR5 421 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 MOB3CQ70IA8 216 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 PATZ1Q9HBE1 687 aaKnown RBP12.83□□□□□ -0.36
SDC3-203ENST00000471567 TRIM36Q9NQ86 728 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 CHCHD3Q9NX63 227 aaKnown RBP12.83□□□□□ -0.36
SDC3-203ENST00000471567 UBAP1Q9NZ09 502 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 PSORS1C1Q9UIG5 152 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 KCNS2Q9ULS6 477 aa12.83□□□□□ -0.36
SDC3-203ENST00000471567 NSD1Q96L73 2696 aaPredicted RBP12.82□□□□□ -0.36
SDC3-203ENST00000471567 OR4C45A6NMZ5 311 aa12.82□□□□□ -0.36
SDC3-203ENST00000471567 INAFM1C9JVW0 142 aa12.82□□□□□ -0.36
SDC3-203ENST00000471567 LGALS8O00214 317 aa12.82□□□□□ -0.36
SDC3-203ENST00000471567 MSMBP08118 114 aa12.82□□□□□ -0.36
SDC3-203ENST00000471567 DVL1P1P54792 670 aaPredicted RBP12.82□□□□□ -0.36
SDC3-203ENST00000471567 ST3GAL4Q11206 333 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms