RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 DEFB112Q30KQ8 113 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 ZNF829Q3KNS6 432 aaPredicted RBP11.55□□□□□ -0.56
USP4-206ENST00000461553 FAHD1Q6P587 224 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 C11orf53Q8IXP5 236 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 FAM216BQ8N7L0 139 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 OR10Z1Q8NGY1 313 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 OR5K1Q8NHB7 308 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 HPSE2Q8WWQ2 592 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 PIGCQ92535 297 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 LYZL4Q96KX0 146 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 TBX15Q96SF7 602 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 CNN2Q99439 309 aaKnown RBP11.55□□□□□ -0.56
USP4-206ENST00000461553 CCL13Q99616 98 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 TTTY10Q9BZA0 68 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 RASSF4Q9H2L5 321 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 PPP1R3EQ9H7J1 279 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 NOX4Q9NPH5 578 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 KRT84Q9NSB2 600 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 TMEM14AQ9Y6G1 99 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 TRRAPQ9Y4A5 3859 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 ZNF816-ZNF321PA0A0X1KG74 233 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 TMEM269A0A1B0GVZ9 245 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 A0A1B0GW55 424 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.54□□□□□ -0.56
USP4-206ENST00000461553 PSMD9O00233 223 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 NDUFB3O43676 98 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DUX4L2P0CJ85 424 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DUX4L3P0CJ86 424 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DUX4L4P0CJ87 422 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DUX4L5P0CJ88 424 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DUX4L6P0CJ89 424 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DUX4L7P0CJ90 424 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 MAP2K3P46734 347 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 RASSF2P50749 326 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DAPP51397 102 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 RIDAP52758 137 aaKnown RBP11.54□□□□□ -0.56
USP4-206ENST00000461553 GMFBP60983 142 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 ESRRGP62508 458 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 IKZF1Q13422 519 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 PTGES3Q15185 160 aaKnown RBP11.54□□□□□ -0.56
USP4-206ENST00000461553 LRRC10Q5BKY1 277 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 STUMQ69YW2 141 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DEGS2Q6QHC5 323 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DUX4L9Q6RFH8 374 aaPredicted RBP11.54□□□□□ -0.56
USP4-206ENST00000461553 SHISA2Q6UWI4 295 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 THAP5Q7Z6K1 395 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 SCCPDHQ8NBX0 429 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 ASB17Q8WXJ9 295 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 OR5P3Q8WZ94 311 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 RPL3LQ92901 407 aaKnown RBP11.54□□□□□ -0.56
USP4-206ENST00000461553 RNF170Q96K19 258 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 HIST1H2AAQ96QV6 131 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 ZNF747Q9BV97 191 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 CADM1Q9BY67 442 aaKnown RBP11.54□□□□□ -0.56
USP4-206ENST00000461553 SIRPDQ9H106 197 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 FAM206AQ9NX38 181 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 ONECUT1Q9UBC0 465 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 DUX4Q9UBX2 424 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 ENOPH1Q9UHY7 261 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 RPUSD1Q9UJJ7 312 aaKnown RBP11.54□□□□□ -0.56
USP4-206ENST00000461553 IKZF2Q9UKS7 526 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 KPTNQ9Y664 436 aa11.54□□□□□ -0.56
USP4-206ENST00000461553 A0A0U1RQV5 110 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 A0A1B0GVI7 797 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 ACOD1A6NK06 481 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 GSC2O15499 205 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 SPRY1O43609 319 aaPredicted RBP11.53□□□□□ -0.56
USP4-206ENST00000461553 PRKYO43930 277 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 ZNF254O75437 659 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 FCN3O75636 299 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 HCCSP53701 268 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 ARF6P62330 175 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 ATP6AP1Q15904 470 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 CDONQ4KMG0 1287 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 C16orf87Q6PH81 154 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 ZNF679Q8IYX0 411 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 CMTM4Q8IZR5 234 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 LHX4Q969G2 390 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 ITFG2Q969R8 447 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 UTP4Q969X6 686 aaKnown RBP11.53□□□□□ -0.56
USP4-206ENST00000461553 OR8B4Q96RC9 309 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 TEAD3Q99594 435 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 PBOV1Q9GZY1 135 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 DNTTIP1Q9H147 329 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 PRDM13Q9H4Q3 707 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 MOB1AQ9H8S9 216 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 UNKLQ9H9P5 680 aaKnown RBP11.53□□□□□ -0.56
USP4-206ENST00000461553 TNFRSF19Q9NS68 423 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 ACOXLQ9NUZ1 547 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 FAM53CQ9NYF3 392 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 HAO2Q9NYQ3 351 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 GTF2A1LQ9UNN4 478 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 COPS3Q9UNS2 423 aa11.53□□□□□ -0.56
USP4-206ENST00000461553 CMYA5Q8N3K9 4069 aa11.52□□□□□ -0.57
USP4-206ENST00000461553 IGHV1-69DA0A0B4J2H0 117 aa11.52□□□□□ -0.57
USP4-206ENST00000461553 CENPVL3A0A0U1RRI6 287 aa11.52□□□□□ -0.57
USP4-206ENST00000461553 SLC22A31A6NKX4 558 aa11.52□□□□□ -0.57
USP4-206ENST00000461553 G3V2T6 193 aa11.52□□□□□ -0.57
USP4-206ENST00000461553 M0R129 80 aa11.52□□□□□ -0.57
USP4-206ENST00000461553 GPR37O15354 613 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms