RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CEACAM16Q2WEN9 425 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 TMEM255AQ5JRV8 349 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 ST8SIA2Q92186 375 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 UCN2Q96RP3 112 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 SOSTQ9BQB4 213 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 OPN4Q9UHM6 478 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 K7ESF4 209 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 CD1AP06126 327 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 SSBP1Q04837 148 aaKnown RBP10.32□□□□□ -0.76
NPHP4-204ENST00000460696 SNTB1Q13884 538 aaKnown RBP10.32□□□□□ -0.76
NPHP4-204ENST00000460696 C20orf196Q8IYI0 205 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 CCDC71LQ8N9Z2 235 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 CLDN23Q96B33 292 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 SAV1Q9H4B6 383 aaPredicted RBP10.32□□□□□ -0.76
NPHP4-204ENST00000460696 PILRBQ9UKJ0 227 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 PHF3Q92576 2039 aaKnown RBP10.32□□□□□ -0.76
NPHP4-204ENST00000460696 UNC80Q8N2C7 3258 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 SOCS1O15524 211 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 ZNF728P0DKX0 622 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 VSIG10L2P0DP72 767 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 APLNRP35414 380 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 MOGAT2Q3SYC2 334 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 ATPAF1Q5TC12 328 aaPredicted RBP10.32□□□□□ -0.76
NPHP4-204ENST00000460696 BRICD5Q6PL45 260 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 C12orf49Q9H741 205 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 C1orf123Q9NWV4 160 aa10.32□□□□□ -0.76
NPHP4-204ENST00000460696 H3BMH7 237 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 CCL3P10147 92 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 MMP16P51512 607 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 DSCR4P56555 118 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-204ENST00000460696 CLDN15P56746 228 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 MRPL49Q13405 166 aaKnown RBP10.31□□□□□ -0.76
NPHP4-204ENST00000460696 IKZF1Q13422 519 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 C6orf15Q6UXA7 325 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-204ENST00000460696 FBXW12Q6X9E4 464 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 BEND4Q6ZU67 534 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 SUMF1Q8NBK3 374 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 SLC38A9Q8NBW4 561 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 OR51F2Q8NH61 342 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 RNF133Q8WVZ7 376 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 AKIRIN1Q9H9L7 192 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-204ENST00000460696 PRR13Q9NZ81 148 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 CHD7Q9P2D1 2997 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 RFPL4AA6NLU0 287 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 LEUTXA8MZ59 168 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 RFPL4AL1F8VTS6 287 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 MS4A18H0YCH9 400 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 TRAPPC2LH3BP13 241 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 MASP2O00187 686 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 TNFSF12O43508 249 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 OR2F2O95006 317 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 CFDP00746 253 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-204ENST00000460696 TTRP02766 147 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 GSTP1P09211 210 aaKnown RBP10.31□□□□□ -0.76
NPHP4-204ENST00000460696 CPN1P15169 458 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 OR2F1Q13607 317 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 MS4A18Q3C1V0 323 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 RTL6Q6ICC9 239 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 OR52H1Q8NGJ2 320 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 OR5L1Q8NGL2 311 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 GPX8Q8TED1 209 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 KCNE4Q8WWG9 221 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 REEP6Q96HR9 211 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 A0A1W2PP11 408 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 ANKRD30BLA7E2S9 258 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 D6RAR5 112 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 FTCDNL1E5RQL4 147 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 TO15178 435 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 AQP8O94778 261 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 TK1P04183 234 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 CD63P08962 238 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 VSIG8P0DPA2 414 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 MS4A3Q96HJ5 214 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 UQCC2Q9BRT2 126 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 SCNM1Q9BWG6 230 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 NELFAQ9H3P2 528 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 RGCCQ9H4X1 137 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 ZFP64Q9NPA5 681 aa10.31□□□□□ -0.76
NPHP4-204ENST00000460696 PRMT8Q9NR22 394 aaPredicted RBP10.31□□□□□ -0.76
NPHP4-204ENST00000460696 FANCMQ8IYD8 2048 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 PHF1O43189 567 aaPredicted RBP10.3□□□□□ -0.76
NPHP4-204ENST00000460696 NRASP01111 189 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 IGHEP01854 428 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 HIST1H1DP16402 221 aaKnown RBP10.3□□□□□ -0.76
NPHP4-204ENST00000460696 ECH1Q13011 328 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 IL11RAQ14626 422 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 DCAF12L2Q5VW00 463 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 FAM219AQ8IW50 185 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 ZNF611Q8N823 705 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 RAB33BQ9H082 229 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 DOCK7Q96N67 2140 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 THADAQ6YHU6 1953 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 OR5H8P0DN80 308 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 RAB6AP20340 208 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 PTGFRP43088 359 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 ZNF169Q14929 603 aaPredicted RBP10.3□□□□□ -0.76
NPHP4-204ENST00000460696 ZNF774Q6NX45 483 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 C6orf201Q7Z4U5 140 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 CDH26Q8IXH8 852 aa10.3□□□□□ -0.76
NPHP4-204ENST00000460696 CNEP1R1Q8N9A8 125 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms