RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 RAB38P57729 211 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 FZD2Q14332 565 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 DGAT2L6Q6ZPD8 337 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 HSD11B1LQ7Z5J1 315 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 MBD3L1Q8WWY6 194 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 NEURL3Q96EH8 262 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 GPA33Q99795 319 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 IL21Q9HBE4 155 aa12.02□□□□□ -0.49
USP40-208ENST00000450966 PEF1Q9UBV8 284 aaKnown RBP12.02□□□□□ -0.49
USP40-208ENST00000450966 A0A0A6YYC8 382 aaPredicted RBP12.01□□□□□ -0.49
USP40-208ENST00000450966 C9orf170A2RU37 121 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 I3L1I5 382 aaPredicted RBP12.01□□□□□ -0.49
USP40-208ENST00000450966 DNPH1O43598 174 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 ZIC2O95409 532 aaPredicted RBP12.01□□□□□ -0.49
USP40-208ENST00000450966 DCDP81605 110 aaKnown RBP12.01□□□□□ -0.49
USP40-208ENST00000450966 OR8G2PQ6IF36 304 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 OR5R1Q8NH85 324 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 FBXL17Q9UF56 701 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 HSPB8Q9UJY1 196 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 RCL1Q9Y2P8 373 aaKnown RBP12.01□□□□□ -0.49
USP40-208ENST00000450966 PHIPQ8WWQ0 1821 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 LOC102725191A0A1B0GVB3 256 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 H3BML4 177 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 ZNF253O75346 499 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 CDS2O95674 445 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 HPXP02790 462 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 POU2F2P09086 479 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 STAG3L3P0CL85 134 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 ULBP3Q9BZM4 244 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 MSL2Q9HCI7 577 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 MMACHCQ9Y4U1 282 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 CDKN3Q16667 212 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 RAB6CQ9H0N0 254 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 TRBV11-1A0A0K0K1C0 115 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 A0A1W2PPC1 479 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 TLCD2A6NGC4 264 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 FIGNL2A6NMB9 653 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 SCRG1O75711 98 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 GDF1P27539 372 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 RAB6CQ53S08 254 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 C12orf73Q69YU5 71 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 UTP23Q9BRU9 249 aaKnown RBP12.01□□□□□ -0.49
USP40-208ENST00000450966 CUTCQ9NTM9 273 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 TNFSF18Q9UNG2 199 aa12.01□□□□□ -0.49
USP40-208ENST00000450966 UBE2CO00762 179 aa12□□□□□ -0.49
USP40-208ENST00000450966 ENSAO43768 121 aaKnown RBP12□□□□□ -0.49
USP40-208ENST00000450966 PRSS23O95084 383 aa12□□□□□ -0.49
USP40-208ENST00000450966 CFDP00746 253 aaPredicted RBP12□□□□□ -0.49
USP40-208ENST00000450966 FPR2P25090 351 aa12□□□□□ -0.49
USP40-208ENST00000450966 TEAD1P28347 426 aa12□□□□□ -0.49
USP40-208ENST00000450966 PXNP49023 591 aaPredicted RBP12□□□□□ -0.49
USP40-208ENST00000450966 SMAD2Q15796 467 aaKnown RBP12□□□□□ -0.49
USP40-208ENST00000450966 CATSPERDQ86XM0 798 aa12□□□□□ -0.49
USP40-208ENST00000450966 MMP21Q8N119 569 aa12□□□□□ -0.49
USP40-208ENST00000450966 OR8B4Q96RC9 309 aa12□□□□□ -0.49
USP40-208ENST00000450966 TRIB1Q96RU8 372 aa12□□□□□ -0.49
USP40-208ENST00000450966 NUDT22Q9BRQ3 303 aa12□□□□□ -0.49
USP40-208ENST00000450966 COL25A1Q9BXS0 654 aaPredicted RBP12□□□□□ -0.49
USP40-208ENST00000450966 TLNRD1Q9H1K6 362 aa12□□□□□ -0.49
USP40-208ENST00000450966 CARHSP1Q9Y2V2 147 aaKnown RBP12□□□□□ -0.49
USP40-208ENST00000450966 WIPI2Q9Y4P8 454 aa12□□□□□ -0.49
USP40-208ENST00000450966 PRAMEF25A6NGN4 478 aa12□□□□□ -0.49
USP40-208ENST00000450966 DLEU1O43261 78 aa12□□□□□ -0.49
USP40-208ENST00000450966 PRAMEF4O60810 478 aa12□□□□□ -0.49
USP40-208ENST00000450966 PRRX1P54821 245 aa12□□□□□ -0.49
USP40-208ENST00000450966 CLDN2P57739 230 aa12□□□□□ -0.49
USP40-208ENST00000450966 CLN3Q13286 438 aa12□□□□□ -0.49
USP40-208ENST00000450966 TMEM104Q8NE00 496 aa12□□□□□ -0.49
USP40-208ENST00000450966 ABHD1Q96SE0 405 aa12□□□□□ -0.49
USP40-208ENST00000450966 HINT3Q9NQE9 182 aaKnown RBP12□□□□□ -0.49
USP40-208ENST00000450966 ISLRO14498 428 aa12□□□□□ -0.49
USP40-208ENST00000450966 SFT2D2O95562 160 aa12□□□□□ -0.49
USP40-208ENST00000450966 HOXA5P20719 270 aa12□□□□□ -0.49
USP40-208ENST00000450966 CD96P40200 585 aa12□□□□□ -0.49
USP40-208ENST00000450966 TAS2R45P59539 299 aa12□□□□□ -0.49
USP40-208ENST00000450966 CMC2Q9NRP2 79 aa12□□□□□ -0.49
USP40-208ENST00000450966 SLC25A37Q9NYZ2 338 aa12□□□□□ -0.49
USP40-208ENST00000450966 RECKO95980 971 aa12□□□□□ -0.49
USP40-208ENST00000450966 MBPP02686 304 aaPredicted RBP12□□□□□ -0.49
USP40-208ENST00000450966 EXT1Q16394 746 aa12□□□□□ -0.49
USP40-208ENST00000450966 CPEB4Q17RY0 729 aaKnown RBP eCLIP12□□□□□ -0.49
USP40-208ENST00000450966 PLXDC2Q6UX71 529 aa12□□□□□ -0.49
USP40-208ENST00000450966 TP53INP2Q8IXH6 220 aa12□□□□□ -0.49
USP40-208ENST00000450966 C2orf88Q9BSF0 95 aa12□□□□□ -0.49
USP40-208ENST00000450966 MAP1LC3CQ9BXW4 147 aa12□□□□□ -0.49
USP40-208ENST00000450966 LANCL2Q9NS86 450 aa12□□□□□ -0.49
USP40-208ENST00000450966 RCC2Q9P258 522 aaKnown RBP12□□□□□ -0.49
USP40-208ENST00000450966 PRSS56P0CW18 603 aa12□□□□□ -0.49
USP40-208ENST00000450966 GABRA6Q16445 453 aa12□□□□□ -0.49
USP40-208ENST00000450966 GTF3AQ92664 365 aaKnown RBP12□□□□□ -0.49
USP40-208ENST00000450966 PECRQ9BY49 303 aa12□□□□□ -0.49
USP40-208ENST00000450966 VDAC3Q9Y277 283 aa12□□□□□ -0.49
USP40-208ENST00000450966 MRPS2Q9Y399 296 aaKnown RBP12□□□□□ -0.49
USP40-208ENST00000450966 C2orf72A6NCS6 295 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 F5H5K5 113 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 K7EQM0 130 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 IGHA1P01876 353 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 GSTP1P09211 210 aaKnown RBP11.99□□□□□ -0.49
USP40-208ENST00000450966 IL13RA2Q14627 380 aa11.99□□□□□ -0.49
USP40-208ENST00000450966 GLIPR1L1Q6UWM5 242 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms