RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 TMEM244Q5VVB8 128 aa12.48□□□□□ -0.41
LIMD1-202ENST00000440097 DHRS7BQ6IAN0 325 aaPredicted RBP12.48□□□□□ -0.41
LIMD1-202ENST00000440097 ANKRD16Q6P6B7 361 aa12.48□□□□□ -0.41
LIMD1-202ENST00000440097 LRRC18Q8N456 261 aa12.48□□□□□ -0.41
LIMD1-202ENST00000440097 OR9K2Q8NGE7 335 aa12.48□□□□□ -0.41
LIMD1-202ENST00000440097 CCDC107Q8WV48 283 aa12.48□□□□□ -0.41
LIMD1-202ENST00000440097 PSMF1Q92530 271 aa12.48□□□□□ -0.41
LIMD1-202ENST00000440097 IL17BQ9UHF5 180 aa12.48□□□□□ -0.41
LIMD1-202ENST00000440097 TMEM82A0PJX8 343 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 RNF222A6NCQ9 220 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 LINC00587B1AMM8 73 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 ZNF878C9JN71 531 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 CCSO14618 274 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 LMX1BO60663 402 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 VAMP5O95183 116 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 NR2C1P13056 603 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 BLOC1S1P78537 153 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 ZNF345Q14585 488 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 RAB11BQ15907 218 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 ASPHD2Q6ICH7 369 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 RAB12Q6IQ22 244 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 C11orf87Q6NUJ2 197 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 SPAG16Q8N0X2 631 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 OR51A2Q8NGJ7 313 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 OR1J2Q8NGS2 313 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 THAP6Q8TBB0 222 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 GLYATL2Q8WU03 294 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 PHYHIPLQ96FC7 376 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 SEC22AQ96IW7 307 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 SRXN1Q9BYN0 137 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 ALX4Q9H161 411 aaPredicted RBP12.47□□□□□ -0.41
LIMD1-202ENST00000440097 ABI3Q9P2A4 366 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 CGGBP1Q9UFW8 167 aaPredicted RBP12.47□□□□□ -0.41
LIMD1-202ENST00000440097 RTTNQ86VV8 2226 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 SYT7O43581 403 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 GALR2O43603 387 aaPredicted RBP12.47□□□□□ -0.41
LIMD1-202ENST00000440097 PRSS3P35030 304 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 POU3F4P49335 361 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 MMP16P51512 607 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 DCAF10Q5QP82 559 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 GLYATL3Q5SZD4 288 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 SLC25A47Q6Q0C1 308 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 CLEC1AQ8NC01 280 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 OR10S1Q8NGN2 331 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 OR5M8Q8NGP6 311 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 SFT2D1Q8WV19 159 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 PDCD10Q9BUL8 212 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 PBOV1Q9GZY1 135 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 MYEF2Q9P2K5 600 aaKnown RBP12.47□□□□□ -0.41
LIMD1-202ENST00000440097 EDARQ9UNE0 448 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 CRYBA1P05813 215 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 POLR2GP62487 172 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIMD1-202ENST00000440097 SRSF3P84103 164 aaKnown RBP12.47□□□□□ -0.41
LIMD1-202ENST00000440097 SWI5Q1ZZU3 235 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 H3F3CQ6NXT2 135 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 GABRG1Q8N1C3 465 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 FGGYQ96C11 551 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 PLA2G3Q9NZ20 509 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 COMMD9Q9P000 198 aa12.47□□□□□ -0.41
LIMD1-202ENST00000440097 ZNF629Q9UEG4 869 aaPredicted RBP12.47□□□□□ -0.41
LIMD1-202ENST00000440097 A0A1B0GTI1 187 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 LOC102725191A0A1B0GVB3 256 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 LRRC3CA6NJW4 275 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 M0QYG6 137 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 CXCL13O43927 109 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 SRSF10O75494 262 aaKnown RBP12.46□□□□□ -0.41
LIMD1-202ENST00000440097 EIF3GO75821 320 aaKnown RBP eCLIP12.46□□□□□ -0.41
LIMD1-202ENST00000440097 ACTL6AO96019 429 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 NANPQ8TBE9 248 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 ROBO4Q8WZ75 1007 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 FAM3DQ96BQ1 224 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 ULBP2Q9BZM5 246 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 TLNRD1Q9H1K6 362 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 UPB1Q9UBR1 384 aa12.46□□□□□ -0.41
LIMD1-202ENST00000440097 BOKQ9UMX3 212 aaPredicted RBP12.46□□□□□ -0.41
LIMD1-202ENST00000440097 PINLYPA6NC86 204 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 F5H0A9 414 aaPredicted RBP12.46□□□□□ -0.42
LIMD1-202ENST00000440097 SLC25A4P12235 298 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 NPBWR1P48145 328 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 ATP1B3P54709 279 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 RAC3P60763 192 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 FAM209BQ5JX69 171 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 UNQ6126/PRO20091Q6UXV3 157 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 ACOT7LQ6ZUV0 252 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 ABHD12BQ7Z5M8 362 aaPredicted RBP12.46□□□□□ -0.42
LIMD1-202ENST00000440097 ZNF283Q8N7M2 679 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 OR51E1Q8TCB6 317 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 SIGLEC12Q96PQ1 595 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 HES7Q9BYE0 225 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 FAM206AQ9NX38 181 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 PCDHGA1Q9Y5H4 931 aa12.46□□□□□ -0.42
LIMD1-202ENST00000440097 TTRP02766 147 aa12.45□□□□□ -0.42
LIMD1-202ENST00000440097 LIPCP11150 499 aa12.45□□□□□ -0.42
LIMD1-202ENST00000440097 HTR2CP28335 458 aa12.45□□□□□ -0.42
LIMD1-202ENST00000440097 CD34P28906 385 aa12.45□□□□□ -0.42
LIMD1-202ENST00000440097 SLC6A9P48067 706 aa12.45□□□□□ -0.42
LIMD1-202ENST00000440097 SRYQ05066 204 aa12.45□□□□□ -0.42
LIMD1-202ENST00000440097 ZNF239Q16600 458 aaKnown RBP12.45□□□□□ -0.42
LIMD1-202ENST00000440097 C2orf76Q3KRA6 126 aa12.45□□□□□ -0.42
LIMD1-202ENST00000440097 PHYHD1Q5SRE7 291 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms