RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 RNF138Q8WVD3 245 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 PIGTQ969N2 578 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 GSX2Q9BZM3 304 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 SAV1Q9H4B6 383 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 DEPPQ9NTK1 212 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 METTL21EPA6NDL7 271 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 EEF1E1-BLOC1S5C9J1V9 151 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 F5H5P2 479 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 LDLRAD4O15165 306 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 HTR3BO95264 441 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ISG15P05161 165 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ERCC1P07992 297 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 UBCP0CG48 685 aaKnown RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 PPP3CBP16298 524 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ZP3P21754 424 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 SUMO3P55854 103 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 DLX5P56178 289 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 TMEM50BP56557 158 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 SEC61A1P61619 476 aaKnown RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 S100A12P80511 92 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 SRYQ05066 204 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 RSPO1Q2MKA7 263 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 ZNF260Q3ZCT1 412 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 C3P1Q6ZMU1 363 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 LYPD6Q86Y78 171 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 IL22RA1Q8N6P7 574 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 M1APQ8TC57 530 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 OXGR1Q96P68 337 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 PDCD10Q9BUL8 212 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 SDHAF2Q9NX18 166 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 TAS2R8Q9NYW2 309 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 RHBDD3Q9Y3P4 386 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 PCDHGA1Q9Y5H4 931 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 PINLYPA6NC86 204 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ZNF878C9JN71 531 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ANGPTL7O43827 346 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 RAD51DO75771 328 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 OR2A4O95047 310 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 GLI4P10075 376 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 LIFP15018 202 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ITGA3P26006 1051 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 MSX1P28360 303 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 GUCA1AP43080 201 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 NPY4RP50391 375 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 PPP1R1AQ13522 171 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 HLXQ14774 488 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 RNASE10Q5GAN6 216 aaKnown RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 LY6G6FQ5SQ64 297 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 TMEM164Q5U3C3 297 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 GALNTL5Q7Z4T8 443 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 C12orf45Q8N5I9 185 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 FADS6Q8N9I5 356 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 STEAP2Q8NFT2 490 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 MARCH1Q8TCQ1 289 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 PAQR8Q8TEZ7 354 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ARHGAP5-AS1Q96IT6 56 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 LYZL4Q96KX0 146 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 ALKBH3Q96Q83 286 aaPredicted RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 OR2A7Q96R45 310 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 SRXN1Q9BYN0 137 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 PNRC2Q9NPJ4 139 aaKnown RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 PLEK2Q9NYT0 353 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 MRPS28Q9Y2Q9 187 aaKnown RBP8.32□□□□□ -1.08
CUX1-206ENST00000437600 KCNMB2Q9Y691 235 aa8.32□□□□□ -1.08
CUX1-206ENST00000437600 KALRNO60229 2985 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 MEGF11A6BM72 1044 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 GABRA1P14867 456 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 CPN1P15169 458 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 SERPINA2P20848 420 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 ACTBP60709 375 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 ACTG1P63261 375 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 GK2Q14410 553 aaPredicted RBP8.31□□□□□ -1.08
CUX1-206ENST00000437600 WIPI1Q5MNZ9 446 aaPredicted RBP8.31□□□□□ -1.08
CUX1-206ENST00000437600 SLC25A47Q6Q0C1 308 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 TMUB2Q71RG4 321 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 OR5AS1Q8N127 324 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 SLC22A24Q8N4F4 322 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 SPICQ8N5J4 248 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 OR14L1PQ8NHC6 308 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 PGAM5Q96HS1 289 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 MFFQ9GZY8 342 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 WDR13Q9H1Z4 485 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 FN3KRPQ9HA64 309 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 SHANK1Q9Y566 2161 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 SESN1Q9Y6P5 492 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 ATRXP46100 2492 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 OR14I1A6ND48 311 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 MPTX1A8MV57 137 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 NPIPA2E9PIF3 369 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 C3orf80F5H4A9 247 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 NPIPA3F8WFD2 350 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 P04436 131 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 ITGB2P05107 769 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 IL5P05113 134 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 GIPP09681 153 aaPredicted RBP8.31□□□□□ -1.08
CUX1-206ENST00000437600 AKR1D1P51857 326 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 CAPZA1P52907 286 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 RAP2BP61225 183 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 IKZF1Q13422 519 aa8.31□□□□□ -1.08
CUX1-206ENST00000437600 SSPNQ14714 243 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms