RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TMEM178AQ8NBL3 297 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 GAL3ST2Q9H3Q3 398 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CHODLQ9H9P2 273 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 CORTO00230 105 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 IGSF11Q5DX21 431 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 TMEM81Q6P7N7 255 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 SYT9Q86SS6 491 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 ZNF611Q8N823 705 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 ZCCHC14Q8WYQ9 949 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 OR1A1Q9P1Q5 309 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 PEF1Q9UBV8 284 aaKnown RBP6.52□□□□□ -1.37
VPS53-204ENST00000437048 ARL2-SNX15V9GYD0 113 aa6.52□□□□□ -1.37
VPS53-204ENST00000437048 GRAMD2BQ96HH9 432 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 LSM2Q9Y333 95 aaKnown RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 TLCD2A6NGC4 264 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 AQP7P3A6NL99 342 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR2G6Q5TZ20 316 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 TTTY10Q9BZA0 68 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 TCRBV5S2A0A599 114 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR5AL1P0C617 328 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 HTR6P50406 440 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 FAM53BQ14153 422 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 LIPNQ5VXI9 398 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 LEUTXA8MZ59 168 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 PPM1DO15297 605 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR4Q2P0C623 313 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR8G3PP0DMU2 310 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 FCER1GP30273 86 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR7A5Q15622 319 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 FBXW5Q969U6 566 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 SEC22AQ96IW7 307 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 PSENENQ9NZ42 101 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 CYR61O00622 381 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 ZNF17P17021 662 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 CD22P20273 847 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 PLPPR5Q32ZL2 321 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 C12orf73Q69YU5 71 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 IGSF8Q969P0 613 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 AMBRA1Q9C0C7 1298 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 SOX21Q9Y651 276 aaPredicted RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 PRAMEF25A6NGN4 478 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 DEFA4P12838 97 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 GAMTQ14353 236 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 PRAMEF5Q5TYX0 476 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 PRAMEF6Q5VXH4 476 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR52N5Q8NH56 324 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 ALPK2Q86TB3 2170 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 DSPPQ9NZW4 1301 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR5B21A6NL26 309 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 FUT3P21217 361 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 RPL34P49207 117 aaKnown RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 SPRYD7Q5W111 196 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 Q6ZSR9 355 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR10G8Q8NGN5 311 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 TIMD4Q96H15 378 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 GPR61Q9BZJ8 451 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 SH3BGRL3Q9H299 93 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 ZNF346Q9UL40 294 aaKnown RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 MBLAC1A4D2B0 266 aaPredicted RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 NPIPB8E9PQR5 432 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 M0QZ24 198 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR7C2O60412 319 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 CTSDP07339 412 aaPredicted RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 MPGP29372 298 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 SMN1Q16637 294 aaKnown RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 OSTM1Q86WC4 334 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR2T6Q8NHC8 308 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 NEUROG1Q92886 237 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 FIZ1Q96SL8 496 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 A0A1B0GU03 582 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 GJB3O75712 270 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR8G2PQ6IF36 304 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR2A2Q6IF42 318 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 APOBEC3DQ96AK3 386 aaPredicted RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 CBX7O95931 251 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 ZNF252P-AS1Q0IIN9 211 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 RPS26P11Q5JNZ5 115 aaPredicted RBP6.51□□□□□ -1.37
VPS53-204ENST00000437048 LRRC18Q8N456 261 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 PELI1Q96FA3 418 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 OR2A5Q96R48 311 aa6.51□□□□□ -1.37
VPS53-204ENST00000437048 A0A1W2PRU2 124 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 MMP16P51512 607 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 SELENOTP62341 195 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 FDX2Q6P4F2 183 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 OR1L6Q8NGR2 347 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 ZNF2Q9BSG1 426 aaPredicted RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 FAM90A26D6RGX4 464 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 HCRTR1O43613 425 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 SKP2Q13309 424 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 ZNF528Q3MIS6 628 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 TTC32Q5I0X7 151 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 ABHD17CQ6PCB6 329 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 FAM57BQ71RH2 274 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 LRP10Q7Z4F1 713 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 TUBA4BQ9H853 241 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 OBP2BQ9NPH6 170 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 HEPACAM2A8MVW5 462 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 CCL23P55773 120 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 TMEM182Q6ZP80 229 aaPredicted RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 NFAM1Q8NET5 270 aaPredicted RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 146.9 ms