RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 GNSP15586 552 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 ZNF3P17036 446 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 HMGA1P17096 107 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 ATF1P18846 271 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 CSNK2A2P19784 350 aaPredicted RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 NT5EP21589 574 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 PAX6P26367 422 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 HTR2AP28223 471 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SHC1P29353 583 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 MPIP34949 423 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OPRD1P41143 372 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SRP9P49458 86 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 STARP49675 285 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 RAB13P51153 203 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 CCR6P51684 374 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SGSHP51688 502 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 PSMD4P55036 377 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 CASP9P55211 416 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 PRMT2P55345 433 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 RGS8P57771 180 aaPredicted RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 REEP5Q00765 189 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 TGM3Q08188 693 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 STX4Q12846 297 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR2F1Q13607 317 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 GGTLC2Q14390 218 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 CDK5R1Q15078 307 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 ZMYND11Q15326 602 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SYPL1Q16563 259 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 MEP1BQ16820 701 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 ZNF658BQ4V348 819 aaPredicted RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 ACSM3Q53FZ2 586 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 CLLU1OSQ5K130 101 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SLC25A25Q6KCM7 469 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 RPL22L1Q6P5R6 122 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 ARL9Q6T311 187 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 UNQ9370/PRO34162Q6UXP9 181 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 DNM1P46Q6ZS02 220 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 TRMT11Q7Z4G4 463 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 C5orf24Q7Z6I8 188 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 RBM45Q8IUH3 476 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 SKA3Q8IX90 412 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 RNF175Q8N4F7 328 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 ZFP41Q8N8Y5 198 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 Q8NBF4 154 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 MAPK1IP1LQ8NDC0 245 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR10H4Q8NGA5 316 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR4F15Q8NGB8 312 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR11G2Q8NGC1 345 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR4D11Q8NGI4 311 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR51G2Q8NGK0 314 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR10G7Q8NGN6 311 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR6K2Q8NGY2 324 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR6N1Q8NGY5 312 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR2T27Q8NH04 317 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR4Q3Q8NH05 313 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR4C6Q8NH72 309 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 OR1S1Q8NH92 325 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 COQ8AQ8NI60 647 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 C11orf45Q8TAV5 145 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 ZNF671Q8TAW3 534 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 FANK1Q8TC84 345 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 GANCQ8TET4 914 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 THEM6Q8WUY1 208 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 MRPS31Q92665 395 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 RAB8BQ92930 207 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 GLYATL1Q969I3 302 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 MARC2Q969Z3 335 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 HAVCR1Q96D42 359 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SMIM19Q96E16 107 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SLC41A3Q96GZ6 507 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 NARS2Q96I59 477 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 ARL5BQ96KC2 179 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 PGLYRP3Q96LB9 341 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 LURAP1Q96LR2 239 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 ZFP3Q96NJ6 502 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 AMDHD1Q96NU7 426 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 TEAD3Q99594 435 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SLC25A21Q9BQT8 299 aaPredicted RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 GINS4Q9BRT9 223 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 DPH7Q9BTV6 452 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 LRRC61Q9BV99 259 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 RAB11FIP5Q9BXF6 653 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 MS4A8Q9BY19 250 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 GSDMCQ9BYG8 508 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 POTEKPQ9BYX7 375 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 PLA2G12AQ9BZM1 189 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 NKX6-2Q9C056 277 aaPredicted RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 SLC7A5P2Q9GIP4 190 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SLC38A1Q9H2H9 487 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 ZDHHC6Q9H6R6 413 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 MYOZ1Q9NP98 299 aaPredicted RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 TMEM138Q9NPI0 162 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SLC17A5Q9NRA2 495 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 POLE3Q9NRF9 147 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 ZCCHC3Q9NUD5 404 aaKnown RBP2.2□□□□□ -2.06
VPS41-206ENST00000418457 RASL12Q9NYN1 266 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 TAS2R3Q9NYW6 316 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 SPG21Q9NZD8 308 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 COMMD9Q9P000 198 aa2.2□□□□□ -2.06
VPS41-206ENST00000418457 TRPC4Q9UBN4 977 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms