RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 PIGCQ92535 297 aa12.35□□□□□ -0.43
LIMS1-206ENST00000414829 NEK6Q9HC98 313 aa12.35□□□□□ -0.43
LIMS1-206ENST00000414829 RNF7Q9UBF6 113 aa12.35□□□□□ -0.43
LIMS1-206ENST00000414829 HHLA2Q9UM44 414 aa12.35□□□□□ -0.43
LIMS1-206ENST00000414829 hCG_1807616A0A1W2PRN6 198 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 LRP5LA4QPB2 252 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 ZNF850A8MQ14 1090 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 P2RY10O00398 339 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 LY6G6DO95868 133 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 NRASP01111 189 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 IGHV2-70P01814 119 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 IGHV4-31P0DP07 118 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 FAHP16930 419 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 MYF6P23409 242 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 ALKBH1Q13686 389 aaKnown RBP12.34□□□□□ -0.43
LIMS1-206ENST00000414829 AVPI1Q5T686 147 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 FAM166AQ6J272 317 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 KCTD8Q6ZWB6 473 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 NLRC3Q7RTR2 1065 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 ZNF676Q8N7Q3 588 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 LINC01356Q8N9X3 169 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 MAPK1IP1LQ8NDC0 245 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 OR5A2Q8NGI9 324 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 OR51F2Q8NH61 342 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 C1orf159Q96HA4 380 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 RASSF4Q9H2L5 321 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 ZNF665Q9H7R5 613 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 PSORS1C1Q9UIG5 152 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 BLOC1S6Q9UL45 172 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 KCNS2Q9ULS6 477 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 RAB26Q9ULW5 256 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 PCDHB10Q9UN67 800 aa12.34□□□□□ -0.43
LIMS1-206ENST00000414829 PPIAL4EA0A075B759 164 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 ANKRD61A6NGH8 418 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 PPIAL4DF5H284 164 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 MYL12BO14950 172 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 NDUFA2O43678 99 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 GRPP07492 148 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 PPIAL4FP0DN26 164 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 CFHR2P36980 270 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 PSMB10P40306 273 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 ST3GAL4Q11206 333 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 ZNF154Q13106 437 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 CNN3Q15417 329 aaKnown RBP12.33□□□□□ -0.44
LIMS1-206ENST00000414829 PRAMEF6Q5VXH4 476 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 TMEM42Q69YG0 159 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 LRRC28Q86X40 367 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-206ENST00000414829 ZNF573Q86YE8 665 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 PRSS35Q8N3Z0 413 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 BPIFB6Q8NFQ5 453 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 OR1M1Q8NGA1 313 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 OR14K1Q8NGZ2 314 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 MYDGFQ969H8 173 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 RNF170Q96K19 258 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 SOX7Q9BT81 388 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 CHST5Q9GZS9 411 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 TLNRD1Q9H1K6 362 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 NARFLQ9H6Q4 476 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 UFSP2Q9NUQ7 469 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 C1orf123Q9NWV4 160 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 TREM2Q9NZC2 230 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 FRRS1LQ9P0K9 344 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 SLC7A11Q9UPY5 501 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 ERGIC3Q9Y282 383 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 POLDIP2Q9Y2S7 368 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 TPRKBQ9Y3C4 175 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 PPIAL4AQ9Y536 164 aa12.33□□□□□ -0.44
LIMS1-206ENST00000414829 TRAV38-1A0A0B4J264 116 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 LOC100289279A0A1B0GTE1 492 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 A0A1B0GTI1 187 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 A8MV72 311 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-206ENST00000414829 IGHV2-5P01817 119 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 LIMS3P0CW19 117 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 LIMS4P0CW20 117 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 ZNF20P17024 532 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 HNF1AP20823 631 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 KIR3DL2P43630 455 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 ZMYND11Q15326 602 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 ODF4Q2M2E3 257 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 SPRNQ5BIV9 151 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 C6orf141Q5SZD1 244 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 RPL22L1Q6P5R6 122 aaKnown RBP12.32□□□□□ -0.44
LIMS1-206ENST00000414829 AHSA2Q719I0 299 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 GLCCI1Q86VQ1 547 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 TEX29Q8N6K0 151 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 OR10Z1Q8NGY1 313 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 OR5AK2Q8NH90 309 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 ZNF420Q8TAQ5 688 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-206ENST00000414829 HPSE2Q8WWQ2 592 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 GGHQ92820 318 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 DVL3Q92997 716 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-206ENST00000414829 C12orf43Q96C57 262 aaKnown RBP12.32□□□□□ -0.44
LIMS1-206ENST00000414829 ZNF184Q99676 751 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-206ENST00000414829 ZNF649Q9BS31 505 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 TMEM160Q9NX00 188 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 UBAP1Q9NZ09 502 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 MIOXQ9UGB7 285 aa12.32□□□□□ -0.44
LIMS1-206ENST00000414829 TRAV20A0A0B4J274 112 aa12.31□□□□□ -0.44
LIMS1-206ENST00000414829 TRBV2A0A0J9YWF9 115 aa12.31□□□□□ -0.44
LIMS1-206ENST00000414829 IGHV3-64DA0A0J9YX35 117 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms