RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SCGNO76038 276 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 TDGF1P3P51864 188 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 MRPL49Q13405 166 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 LINC00303Q3SY05 128 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 SFRP4Q6FHJ7 346 aaPredicted RBP15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 GFRALQ6UXV0 394 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 GLDNQ6ZMI3 551 aaPredicted RBP15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 Q6ZSR3 168 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 PIAS4Q8N2W9 510 aaPredicted RBP15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 C9orf62Q8N4C0 152 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 C17orf78Q8N4C9 275 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 OR14K1Q8NGZ2 314 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 FGFBP3Q8TAT2 258 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 CPNE2Q96FN4 548 aaPredicted RBP15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 REEP6Q96HR9 211 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 BOD1Q96IK1 185 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 UQCC2Q9BRT2 126 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 SFXN3Q9BWM7 321 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 OBP2BQ9NPH6 170 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNF224Q9NZL3 707 aa15.83■□□□□ 0.12
CCDC88C-203ENST00000389856 PTPRQQ9UMZ3 2332 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 TMEM272A0A1B0GTI8 110 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 C1QTNF9BB2RNN3 333 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 C1QTNF9P0C862 333 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 AKAIN1P0CW23 69 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 COX5AP20674 150 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 IGHV1-2P23083 117 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 FOXG1P55316 489 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 KLRB1Q12918 225 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 MALLQ13021 153 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 RBMS2Q15434 407 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 Q5BKY6 102 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 SFRP5Q5T4F7 317 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 LAMTOR1Q6IAA8 161 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 ASPHD2Q6ICH7 369 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 RAB12Q6IQ22 244 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 MTFR2Q6P444 385 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 SEMA6DQ8NFY4 1073 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNF431Q8TF32 576 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 APOBEC3DQ96AK3 386 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 DACT3Q96B18 629 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 ADAT3Q96EY9 351 aaPredicted RBP15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 C1QTNF5Q9BXJ0 243 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 OPA3Q9H6K4 179 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNF319Q9P2F9 582 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 HSPB11Q9Y547 144 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 FREM1Q5H8C1 2179 aa15.82■□□□□ 0.12
CCDC88C-203ENST00000389856 LDLRAD4O15165 306 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNHIT1O43257 154 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 ALX3O95076 343 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 MELTFP08582 738 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 SPOCK1Q08629 439 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 PCGF3Q3KNV8 242 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 HIKESHIQ53FT3 197 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 C1QTNF12Q5T7M4 302 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNF529Q6P280 563 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 VWA1Q6PCB0 445 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 SEZ6L2Q6UXD5 910 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 UTS2BQ765I0 119 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 NAA40Q86UY6 237 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 JAGN1Q8N5M9 183 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 GPX8Q8TED1 209 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 SGK3Q96BR1 496 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 NPDC1Q9NQX5 325 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 MRPL15Q9P015 296 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 FAM215AQ9Y5M1 114 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 GTF3C1Q12789 2109 aa15.81■□□□□ 0.12
CCDC88C-203ENST00000389856 TRAV18A0A075B6X5 111 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 J3QW42 95 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 TNFSF13O75888 250 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 ALDOBP05062 364 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 GLYATL3Q5SZD4 288 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 ZBTB37Q5TC79 503 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 RTL6Q6ICC9 239 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 CPEB3Q8NE35 698 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 OR13C9Q8NGT0 318 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 ASB13Q8WXK3 278 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 STARD4Q96DR4 205 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 TECTBQ96PL2 329 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 NUDT16L1Q9BRJ7 211 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 ZNF436Q9C0F3 470 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 ATG5Q9H1Y0 275 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 OR10A4Q9H209 315 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 METTL17Q9H7H0 456 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 B3GNT2Q9NY97 397 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 NKIRAS2Q9NYR9 191 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 FBLN5Q9UBX5 448 aa15.8■□□□□ 0.12
CCDC88C-203ENST00000389856 C5orf49A4QMS7 147 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 ARPC1BO15143 372 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 CREBL2O60519 120 aaPredicted RBP15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 RAD51DO75771 328 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 LPLP06858 475 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 C4BPBP20851 252 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 VEGFCP49767 419 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 GABRA6Q16445 453 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 TBC1D28Q2M2D7 210 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 SNAI3Q3KNW1 292 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 COLCA1Q6ZS62 124 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 LYPD6Q86Y78 171 aa15.79■□□□□ 0.12
CCDC88C-203ENST00000389856 PNLDC1Q8NA58 520 aaKnown RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms