RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 EXOSC4Q9NPD3 245 aaKnown RBP1.17□□□□□ -2.22
VPS13A-206ENST00000376646 C21orf62Q9NYP8 219 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 GGA2Q9UJY4 613 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 OR51B2Q9Y5P1 312 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 RP1L1Q8IWN7 2480 aaPredicted RBP1.17□□□□□ -2.22
VPS13A-206ENST00000376646 YEATS2Q9ULM3 1422 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 KIF26AQ9ULI4 1882 aaPredicted RBP1.17□□□□□ -2.22
VPS13A-206ENST00000376646 GOLGA8JA6NMD2 632 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 LINC01619G3V211 115 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 SMC2O95347 1197 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 SNAI1O95863 264 aaPredicted RBP1.17□□□□□ -2.22
VPS13A-206ENST00000376646 CSTAP01040 98 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 GCGP01275 180 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 IL4P05112 153 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 GOLGA8HP0CJ92 632 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 HSPD1P10809 573 aaKnown RBP1.17□□□□□ -2.22
VPS13A-206ENST00000376646 HOXB8P17481 243 aaPredicted RBP1.17□□□□□ -2.22
VPS13A-206ENST00000376646 IL1RNP18510 177 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 PTNP21246 168 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 PCK1P35558 622 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 TAS2R39P59534 338 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 SLC35A1P78382 337 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF816Q0VGE8 651 aaPredicted RBP1.17□□□□□ -2.22
VPS13A-206ENST00000376646 DMC1Q14565 340 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 LY6EQ16553 131 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 HSP90AA4PQ58FG1 418 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 GUSBP11Q6P575 273 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 DAW1Q8N136 415 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 OSR2Q8N2R0 312 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 OR5T1Q8NG75 326 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 OR6K6Q8NGW6 343 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 TMEM175Q9BSA9 504 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 NUDT9Q9BW91 350 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 SFXN3Q9BWM7 321 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 ARV1Q9H2C2 271 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 LZTFL1Q9NQ48 299 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 TREX1Q9NSU2 369 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 NDRG2Q9UN36 371 aaKnown RBP1.17□□□□□ -2.22
VPS13A-206ENST00000376646 SIGLEC7Q9Y286 467 aa1.17□□□□□ -2.22
VPS13A-206ENST00000376646 SBNO1A3KN83 1393 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 IGHV3-49A0A0A0MS15 119 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 TRAV40A0A0B4J280 105 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 CENPVL3A0A0U1RRI6 287 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 K7EM74 188 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 RRP8O43159 456 aaKnown RBP1.16□□□□□ -2.22
VPS13A-206ENST00000376646 GMDSO60547 372 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 PLIN3O60664 434 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 PLEKHA8P1O95397 391 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 CYB5R3P00387 301 aaPredicted RBP1.16□□□□□ -2.22
VPS13A-206ENST00000376646 IGLV2-8P01709 118 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 IVDP26440 423 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 PRLHRP49683 370 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 CMC4P56277 68 aaPredicted RBP1.16□□□□□ -2.22
VPS13A-206ENST00000376646 SLC35B1P78383 322 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 INCA1Q0VD86 236 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 ATP6V1FQ16864 119 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 HNRNPA1L2Q32P51 320 aaKnown RBP1.16□□□□□ -2.22
VPS13A-206ENST00000376646 STEAP4Q687X5 459 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 ASCC1Q8N9N2 400 aaKnown RBP1.16□□□□□ -2.22
VPS13A-206ENST00000376646 CPNE4Q96A23 557 aaPredicted RBP1.16□□□□□ -2.22
VPS13A-206ENST00000376646 Q96MT0 163 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 NAPGQ99747 312 aaPredicted RBP1.16□□□□□ -2.22
VPS13A-206ENST00000376646 EMC6Q9BV81 110 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 HEBP1Q9NRV9 189 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 SIGLEC9Q9Y336 463 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 CBY1Q9Y3M2 126 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 KLF12Q9Y4X4 402 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 LRRC42Q9Y546 428 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF608Q9ULD9 1512 aaPredicted RBP1.16□□□□□ -2.22
VPS13A-206ENST00000376646 BRWD3Q6RI45 1802 aa1.16□□□□□ -2.22
VPS13A-206ENST00000376646 A0A0J9YYE9 177 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 BOLA2-SMG1P6H3BVE0 249 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 RPL36A-HNRNPH2H7BZ11 118 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 PSPHP1O15172 72 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 KDELR3O43731 214 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 CCDC22O60826 627 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 TRAPPC6AO75865 159 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 GATBO75879 557 aaKnown RBP1.15□□□□□ -2.22
VPS13A-206ENST00000376646 RBBP9O75884 186 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 RCBTB2O95199 551 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 TTC4O95801 387 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 TRBC1P01850 177 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 RPN2P04844 631 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 PRKACBP22694 351 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 CXCR1P25024 350 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 HCCSP53701 268 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 MTPNP58546 118 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 PSMC5P62195 406 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 XIAPP98170 497 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 KDSRQ06136 332 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 ZNF616Q08AN1 781 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 IFFO1Q0D2I5 559 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 ST3GAL4Q11206 333 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 STK38Q15208 465 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 NDUFAF6Q330K2 333 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 SLC25A25Q6KCM7 469 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 EPGNQ6UW88 154 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 NEGR1Q7Z3B1 354 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 HMGN2P46Q86SG4 172 aa1.15□□□□□ -2.22
VPS13A-206ENST00000376646 ERO1BQ86YB8 467 aa1.15□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms