RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 RTL8AQ9BWD3 113 aa11.24□□□□□ -0.61
VPS29-201ENST00000360579 FN3KQ9H479 309 aa11.24□□□□□ -0.61
VPS29-201ENST00000360579 HEXA-AS1Q9H8Q6 139 aa11.24□□□□□ -0.61
VPS29-201ENST00000360579 ZNF702PQ9H963 129 aa11.24□□□□□ -0.61
VPS29-201ENST00000360579 ABCB9Q9NP78 766 aa11.24□□□□□ -0.61
VPS29-201ENST00000360579 SERTAD4Q9NUC0 356 aa11.24□□□□□ -0.61
VPS29-201ENST00000360579 NDUFAF4Q9P032 175 aa11.24□□□□□ -0.61
VPS29-201ENST00000360579 A0A1W2PPH5 198 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 TMEM210A6NLX4 147 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 ZNF878C9JN71 531 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 K7EIL1 84 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 TBX1O43435 398 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 CHST1O43916 411 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 ACAA1P09110 424 aaPredicted RBP11.23□□□□□ -0.61
VPS29-201ENST00000360579 RPS27P42677 84 aaKnown RBP11.23□□□□□ -0.61
VPS29-201ENST00000360579 SMCPP49901 116 aaPredicted RBP11.23□□□□□ -0.61
VPS29-201ENST00000360579 BMXP51813 675 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 LGALS4P56470 323 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 SMIM11AP58511 58 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 GRB2P62993 217 aaKnown RBP11.23□□□□□ -0.61
VPS29-201ENST00000360579 MXRA7P84157 204 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS29-201ENST00000360579 C11orf87Q6NUJ2 197 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 SLC15A3Q8IY34 581 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 OR52H1Q8NGJ2 320 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 OR52J3Q8NH60 311 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 ANGPTL6Q8NI99 470 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 SLAMF6Q96DU3 332 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 REEP6Q96HR9 211 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 AJUBAQ96IF1 538 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 DHRS1Q96LJ7 313 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 PAPOLGQ9BWT3 736 aaKnown RBP11.23□□□□□ -0.61
VPS29-201ENST00000360579 SAR1AQ9NR31 198 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 SNTG1Q9NSN8 517 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 CENPMQ9NSP4 180 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 CD300AQ9UGN4 299 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 MPC1Q9Y5U8 109 aa11.23□□□□□ -0.61
VPS29-201ENST00000360579 hCG_1809904A0A1W2PP81 198 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 A0A1W2PPE2 198 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 A0A1W2PR64 198 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 A0A1W2PRV1 198 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 TVP23AA6NH52 213 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 ADARB2-AS1A8MUL3 147 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 VGLL3A8MV65 326 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 NDUFAB1O14561 156 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 APOC1P02654 83 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 ALDOBP05062 364 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 ANXA2P07355 339 aaKnown RBP11.22□□□□□ -0.61
VPS29-201ENST00000360579 IGLL1P15814 213 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 PYCR1P32322 319 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 IFNGR2P38484 337 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 GMFBP60983 142 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 DEFB121Q5J5C9 76 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 FAM185AQ8N0U4 392 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 WIPF2Q8TF74 440 aaPredicted RBP11.22□□□□□ -0.61
VPS29-201ENST00000360579 SGK3Q96BR1 496 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 FUZQ9BT04 418 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 PRSS22Q9GZN4 317 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 WDR13Q9H1Z4 485 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 NLKQ9UBE8 527 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 PITPNC1Q9UKF7 332 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 LRP12Q9Y561 859 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 COMMD3-BMI1R4GMX3 469 aa11.22□□□□□ -0.61
VPS29-201ENST00000360579 hCG_38984A0A1B0GV85 526 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 OR2AT4A6NND4 320 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 SLC22A2O15244 555 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 DUS4LO95620 317 aaKnown RBP11.21□□□□□ -0.61
VPS29-201ENST00000360579 SPARCP09486 303 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 HSD11B1P28845 292 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 CX3CR1P49238 355 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 GSK3AP49840 483 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 ENTPD1P49961 510 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 SLC35A2P78381 396 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 HABP2Q14520 560 aaPredicted RBP11.21□□□□□ -0.61
VPS29-201ENST00000360579 CNN3Q15417 329 aaKnown RBP11.21□□□□□ -0.61
VPS29-201ENST00000360579 SLC35F1Q5T1Q4 408 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 FAM86B1Q8N7N1 296 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 OR5K1Q8NHB7 308 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 PIFOQ8TCI5 191 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 RCN3Q96D15 328 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 C7orf34Q96L11 122 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 DDOQ99489 341 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 HOPXQ9BPY8 73 aaPredicted RBP11.21□□□□□ -0.61
VPS29-201ENST00000360579 WNT10AQ9GZT5 417 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 RGCCQ9H4X1 137 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 GMPR2Q9P2T1 348 aaKnown RBP11.21□□□□□ -0.61
VPS29-201ENST00000360579 SAMD4AQ9UPU9 718 aaKnown RBP11.21□□□□□ -0.61
VPS29-201ENST00000360579 TCF19Q9Y242 345 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 RHBDD3Q9Y3P4 386 aa11.21□□□□□ -0.61
VPS29-201ENST00000360579 MEGF11A6BM72 1044 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 HMGB1P1B2RPK0 211 aaPredicted RBP11.2□□□□□ -0.62
VPS29-201ENST00000360579 AKR7A2O43488 359 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 GADD45GO95257 159 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 PF4V1P10720 104 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 GLRA1P23415 457 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 FMO3P31513 532 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 GABRA2P47869 451 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 CD69Q07108 199 aa11.2□□□□□ -0.62
VPS29-201ENST00000360579 ARSJQ5FYB0 599 aaPredicted RBP11.2□□□□□ -0.62
VPS29-201ENST00000360579 FAM76BQ5HYJ3 339 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms