RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RTBDNQ9BSG5 229 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 NICN1Q9BSH3 213 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 THAP7Q9BT49 309 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 LPAR5Q9H1C0 372 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 RNF122Q9H9V4 155 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF556Q9HAH1 456 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 RHBDL2Q9NX52 303 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ABRACLQ9P1F3 81 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 MTFP1Q9UDX5 166 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ORC6Q9Y5N6 252 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SNX5Q9Y5X3 404 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 INTS1Q8N201 2190 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 FLNCQ14315 2725 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZANQ9Y493 2812 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 LOC100509620A0A075B734 347 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TRBV6-7A0A0A0MS04 114 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TRBV11-1A0A0K0K1C0 115 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 A0A1W2PP11 408 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 H0YIZ8 118 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SLC17A2O00624 439 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 LYRM1O43325 122 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SLC19A2O60779 497 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF780AO75290 641 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 C1QBP02746 253 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 HSMCR30P0CW71 290 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 MPGP29372 298 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 RBMXP38159 391 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 PITPNBP48739 271 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CCR6P51684 374 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SH3BGRP55822 239 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 CLDN12P56749 244 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TAS2R20P59543 309 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 C17orf67Q0P5P2 114 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 MADCAM1Q13477 382 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 OR8B8Q15620 311 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TATDN3Q17R31 274 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 FAM76BQ5HYJ3 339 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 NHLRC3Q5JS37 347 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF626Q68DY1 528 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 GPR139Q6DWJ6 353 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 FAAP20Q6NZ36 180 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 GLDNQ6ZMI3 551 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 NDUFAF7Q7L592 441 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 RRM2BQ7LG56 351 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 C5orf24Q7Z6I8 188 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CDH26Q8IXH8 852 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 C11orf53Q8IXP5 236 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF100Q8IYN0 542 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 Q8N402 240 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 UXS1Q8NBZ7 420 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ACBD4Q8NC06 268 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 OR52N4Q8NGI2 321 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 PLPPR1Q8TBJ4 325 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZFAND1Q8TCF1 268 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SLC38A2Q96QD8 506 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 C1QTNF5Q9BXJ0 243 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SLC7A5P2Q9GIP4 190 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 OR8D2Q9GZM6 311 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 WNT5BQ9H1J7 359 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SOHLH2Q9NX45 425 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 IMPAD1Q9NX62 359 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 NLKQ9UBE8 527 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CRNNQ9UBG3 495 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 NUFIP1Q9UHK0 495 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 SLC13A4Q9UKG4 626 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 VSIG4Q9Y279 399 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 PIEZO1Q92508 2521 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 NIPBLQ6KC79 2804 aaeCLIP1.98□□□□□ -2.09
VPS54-202ENST00000354504 NOTCH2Q04721 2471 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 A0A0U1RQV5 110 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 hCG_38984A0A1B0GV85 526 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 F8VVB4 439 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 F8VWA3 439 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 GABARAPH6UMI1 98 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 J3QLW9 94 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 K7EM74 188 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 RRHO14718 337 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 YKT6O15498 198 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TOXO94900 526 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 NDUFB6O95139 128 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 HPP00738 406 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 IGHG3P01860 377 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 WNT2P09544 360 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 EGR2P11161 476 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF19P17023 458 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF20P17024 532 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 RAB3BP20337 219 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 WNT5AP41221 380 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 RRAS2P62070 204 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 PLCXD2Q0VAA5 305 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 STX4Q12846 297 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ANGPT1Q15389 498 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 C2orf76Q3KRA6 126 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 HACD4Q5VWC8 232 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 RTL6Q6ICC9 239 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 CCDC144NLQ6NUI1 221 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 C5orf46Q6UWT4 87 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 SLC35D2Q76EJ3 337 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 SPICQ8N5J4 248 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 OR4K17Q8NGC6 315 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms