RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 COX5AP20674 150 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 SLC17A1Q14916 467 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 OR2I1PQ8NGU4 316 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 ADGRG7Q96K78 797 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 POM121L2Q96KW2 1035 aa11.37□□□□□ -0.59
SDC3-201ENST00000336798 ZNF629Q9UEG4 869 aaPredicted RBP11.37□□□□□ -0.59
SDC3-201ENST00000336798 J3QR89 54 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 JTBO76095 146 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 ETHE1O95571 254 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 ZNF26P17031 533 aaPredicted RBP11.36□□□□□ -0.59
SDC3-201ENST00000336798 CA6P23280 308 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 PSMB6P28072 239 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 DCTDP32321 178 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 OR2T2Q6IF00 324 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 GUSBP11Q6P575 273 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 GSX2Q9BZM3 304 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 NDUFB11Q9NX14 153 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 SIGLEC1Q9BZZ2 1709 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 MYH9P35579 1960 aaKnown RBP11.36□□□□□ -0.59
SDC3-201ENST00000336798 FKBP2P26885 142 aaKnown RBP11.36□□□□□ -0.59
SDC3-201ENST00000336798 CCR2P41597 374 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 ENDOGQ14249 297 aaKnown RBP11.36□□□□□ -0.59
SDC3-201ENST00000336798 COMMD1Q8N668 190 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 NEURL2Q9BR09 285 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 C3orf80F5H4A9 247 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 CEACAM6P40199 344 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 DIO1P49895 249 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 EMC4Q5J8M3 183 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 LYG1Q8N1E2 194 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 GNPNAT1Q96EK6 184 aaPredicted RBP11.36□□□□□ -0.59
SDC3-201ENST00000336798 CABLES2Q9BTV7 478 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 ZDHHC11Q9H8X9 412 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 CNN1P51911 297 aaKnown RBP11.36□□□□□ -0.59
SDC3-201ENST00000336798 GSG1Q2KHT4 349 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 NCR3LG1Q68D85 454 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 KLHDC8BQ8IXV7 354 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 NOXO1Q8NFA2 376 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 FCGR3BO75015 233 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 DUS4LO95620 317 aaKnown RBP11.36□□□□□ -0.59
SDC3-201ENST00000336798 HPP00738 406 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 MEOX1P50221 254 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 EGR3Q06889 387 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 PTRH1Q86Y79 214 aaKnown RBP11.36□□□□□ -0.59
SDC3-201ENST00000336798 OR6S1Q8NH40 331 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 GPX8Q8TED1 209 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 MRGPRX4Q96LA9 322 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 TAAR9Q96RI9 348 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 LRRC61Q9BV99 259 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 UCK1Q9HA47 277 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 SLC25A37Q9NYZ2 338 aa11.36□□□□□ -0.59
SDC3-201ENST00000336798 BMPR1BO00238 502 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 LYZL6O75951 148 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 METAP1P53582 386 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 FZD2Q14332 565 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 SLC25A35Q3KQZ1 300 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 FAM27D1Q5T7N8 215 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 NHLRC2Q8NBF2 726 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 OR2A1Q8NGT9 310 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 PRR7Q8TB68 274 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 RPEQ96AT9 228 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 KTI12Q96EK9 354 aaPredicted RBP11.35□□□□□ -0.59
SDC3-201ENST00000336798 IP6K3Q96PC2 410 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 JAM3Q9BX67 310 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 E5RGE8 158 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 CBR3O75828 277 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 TMEM196Q5HYL7 178 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 TCTE3Q8IZS6 198 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 ST8SIA1Q92185 356 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 PHYHIPQ92561 330 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 AAMDCQ9H7C9 122 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 C20orf141Q9NUB4 165 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 NSG2Q9Y328 171 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 FRG2CA6NGY1 282 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 KIRREL2Q6UWL6 708 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 CLDN23Q96B33 292 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 PELI1Q96FA3 418 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 FOXB1Q99853 325 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 SLC25A22Q9H936 323 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 DHHO43323 396 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 ZNF205O95201 554 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 MMP7P09237 267 aaPredicted RBP11.35□□□□□ -0.59
SDC3-201ENST00000336798 GP2P55259 537 aaKnown RBP11.35□□□□□ -0.59
SDC3-201ENST00000336798 HSD17B10Q99714 261 aaKnown RBP11.35□□□□□ -0.59
SDC3-201ENST00000336798 GIPP09681 153 aaPredicted RBP11.35□□□□□ -0.59
SDC3-201ENST00000336798 BSGP35613 385 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 HNRNPA3P51991 378 aaKnown RBP11.35□□□□□ -0.59
SDC3-201ENST00000336798 FAM3AP98173 230 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 COL19A1Q14993 1142 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 RNASEKQ6P5S7 137 aaKnown RBP11.35□□□□□ -0.59
SDC3-201ENST00000336798 TMEM65Q6PI78 240 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 FA2HQ7L5A8 372 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 RTN4IP1Q8WWV3 396 aaPredicted RBP11.35□□□□□ -0.59
SDC3-201ENST00000336798 DERL3Q96Q80 235 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 LAMP3Q9UQV4 416 aa11.35□□□□□ -0.59
SDC3-201ENST00000336798 SLC25A5P05141 298 aaKnown RBP11.34□□□□□ -0.59
SDC3-201ENST00000336798 TRAPPC2P0DI81 140 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 TRAPPC2BP0DI82 140 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 ABHD14AQ9BUJ0 271 aa11.34□□□□□ -0.59
SDC3-201ENST00000336798 TRAF4Q9BUZ4 470 aaPredicted RBP11.34□□□□□ -0.59
SDC3-201ENST00000336798 KLK11Q9UBX7 282 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms