RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PPP1R3EQ9H7J1 279 aa12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 ERRFI1Q9UJM3 462 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-202ENST00000334448 FABP12A6NFH5 140 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 CRYAAP02489 173 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 THBDP07204 575 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 HCKP08631 526 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 KITLGP21583 273 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 PTAFRP25105 342 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 TALDO1P37837 337 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 POU3F4P49335 361 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 ZNF83P51522 516 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 FUT6P51993 359 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 CLDN12P56749 244 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 HLXQ14774 488 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 P2RY14Q15391 338 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 XKRXQ6PP77 449 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 C22orf34Q6ZV56 151 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 GDPD1Q8N9F7 314 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 OR51D1Q8NGF3 324 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 OR1J1Q8NGS3 322 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 SLC25A40Q8TBP6 338 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 LRRC46Q96FV0 321 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 C1QTNF6Q9BXI9 259 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 OR2J1Q9GZK6 312 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 SRRQ9GZT4 340 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 GPR173Q9NS66 373 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 RHBDL2Q9NX52 303 aa12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 NOP16Q9Y3C1 178 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-202ENST00000334448 A0A0A6YYH2 397 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 A6NJ64 397 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 TMEM14DPA8MWL7 114 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 J3QRK9 145 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 FAM157BP0CG42 384 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 ARSBP15848 533 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 CD40P25942 277 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 GLRXP35754 106 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 ART1P52961 327 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 ZP1P60852 638 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 PRDX4Q13162 271 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 C2orf76Q3KRA6 126 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 TMEM108Q6UXF1 575 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 ASCL4Q6XD76 172 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 CDH24Q86UP0 819 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 FJX1Q86VR8 437 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 ZDHHC23Q8IYP9 409 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 ZNF808Q8N4W9 903 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 PNLDC1Q8NA58 520 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 NUP37Q8NFH4 326 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 OR4M1Q8NGD0 313 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 KLF14Q8TD94 323 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 SDHCQ99643 169 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 PAPOLGQ9BWT3 736 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 EXTL2Q9UBQ6 330 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 SLC7A11Q9UPY5 501 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 SPEF1Q9Y4P9 236 aa12.8□□□□□ -0.36
CCDC88C-202ENST00000334448 NBASA2RRP1 2371 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 TMEM272A0A1B0GTI8 110 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 PQLC2LA1A4F0 135 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 OR5B21A6NL26 309 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 ANKRD30BLA7E2S9 258 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 M0R1B8 84 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 OCMP0CE72 109 aaPredicted RBP12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 ZNF250P15622 560 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 PTGFRP43088 359 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 RBP2P50120 134 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 RPS23P62266 143 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 TLE1Q04724 770 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 PSG7Q13046 419 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 CEACAM21Q3KPI0 293 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 ZNF718Q3SXZ3 478 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 PLCXD3Q63HM9 321 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 PYHIN1Q6K0P9 492 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 FAM131AQ6UXB0 335 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 CMTM4Q8IZR5 234 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 OR5A2Q8NGI9 324 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 HPSE2Q8WWQ2 592 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 CMBLQ96DG6 245 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 ITPKCQ96DU7 683 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 NUDT16L1Q9BRJ7 211 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 SLC22A4Q9H015 551 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 NGBQ9NPG2 151 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 IL36GQ9NZH8 169 aa12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 MRPS28Q9Y2Q9 187 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-202ENST00000334448 CACNA1BQ00975 2339 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 IGKV1-27A0A075B6S5 117 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 ZNF850A8MQ14 1090 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 FAM25AB3EWG3 89 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 FAM25CB3EWG5 89 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 FAM25GB3EWG6 89 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 CTDSPLO15194 276 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 UPK1BO75841 260 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 SCGNO76038 276 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 OR3A4PP47883 348 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 PITPNBP48739 271 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 ATP1B3P54709 279 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 PRSS12P56730 875 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 ERVS71-1P61550 626 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 TFF3Q07654 80 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 FAM189A2Q15884 450 aa12.78□□□□□ -0.36
CCDC88C-202ENST00000334448 ZNF181Q2M3W8 571 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms