RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 IFNKQ9P0W0 207 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DUX4Q9UBX2 424 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 DDX19BQ9UMR2 479 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 FLVCR2Q9UPI3 526 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 RCL1Q9Y2P8 373 aaKnown RBP2.05□□□□□ -2.08
HMGB1-201ENST00000326004 SAR1BQ9Y6B6 198 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 MTCH2Q9Y6C9 303 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 TONSLQ96HA7 1378 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 REV3LO60673 3130 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 COL5A3P25940 1745 aaPredicted RBP2.05□□□□□ -2.08
HMGB1-201ENST00000326004 PTPN13Q12923 2485 aa2.05□□□□□ -2.08
HMGB1-201ENST00000326004 IGHV3-66A0A0C4DH42 116 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF816-ZNF321PA0A0X1KG74 233 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 FAM186AA6NE01 2351 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 F6UB75 175 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 J3QKU1 62 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 SLC9A3R1O14745 358 aaPredicted RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 SCAMP2O15127 329 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF324O75467 553 aaPredicted RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 NFAT5O94916 1531 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 FARS2O95363 451 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 WISP3O95389 354 aaPredicted RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 DCNP07585 359 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 KRT16P08779 473 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 CALM1P0DP23 149 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 CALM2P0DP24 149 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 CALM3P0DP25 149 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 FOLR1P15328 257 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 HOXB8P17481 243 aaPredicted RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 LCN1P31025 176 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 GPR1P46091 355 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 NCBP2P52298 156 aaKnown RBP eCLIP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ATP5J2P56134 94 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ATP6V0D1P61421 351 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 STXBP1P61764 594 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 SLC7A9P82251 487 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 SLC25A11Q02978 314 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF33AQ06730 810 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 XRCC4Q13426 336 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 TSC22D1Q15714 1073 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 GABRA6Q16445 453 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 DEFB116Q30KQ4 102 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 TRMT5Q32P41 509 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 SMUG1Q53HV7 270 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF493Q6ZR52 646 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ABCA12Q86UK0 2595 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 MYOCDQ8IZQ8 938 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 SLC7A5P1Q8MH63 180 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 SYCE1Q8N0S2 351 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ARHGAP18Q8N392 663 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 VPS8Q8N3P4 1428 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 DOCK8Q8NF50 2099 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 NUBPLQ8TB37 319 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 TCP10LQ8TDR4 215 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ZFP90Q8TF47 636 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 CACNG8Q8WXS5 425 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ISOC2Q96AB3 205 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 OPTNQ96CV9 577 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 BMFQ96LC9 184 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 CHID1Q9BWS9 393 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 PRRG3Q9BZD7 231 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 PLA2G2FQ9BZM2 168 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 TSGA10Q9BZW7 698 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 PARP12Q9H0J9 701 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 TREM1Q9NP99 234 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 CYTL1Q9NRR1 136 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 ZNHIT6Q9NWK9 470 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 YARS2Q9Y2Z4 477 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 RBMX2Q9Y388 322 aaKnown RBP2.04□□□□□ -2.08
HMGB1-201ENST00000326004 GOLT1BQ9Y3E0 138 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 GMEB1Q9Y692 573 aa2.04□□□□□ -2.08
HMGB1-201ENST00000326004 MN1Q10571 1320 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ADGRA3Q8IWK6 1321 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 IGLV4-60A0A075B6I1 120 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 IGKV2-28A0A075B6P5 120 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 OR6C74A6NCV1 312 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 SLC22A20A6NK97 555 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 INS-IGF2F8WCM5 200 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 KMOO15229 486 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 GMDSO60547 372 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 E2F6O75461 281 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 HSBP1O75506 76 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ETHE1O95571 254 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 RAB3DO95716 219 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 OXTP01178 125 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 IGKV2D-28P01615 120 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 HBE1P02100 147 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 RPSAP08865 295 aaKnown RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 CCL2P13500 99 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 IGFBP3P17936 291 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 CCNOP22674 350 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 HRH1P35367 487 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 RPS9P46781 194 aaKnown RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 CYB561P49447 251 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 TNNC1P63316 161 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 SP4Q02446 784 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 SIGLEC14Q08ET2 396 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 TCP10Q12799 353 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 GPR176Q14439 515 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 CLINT1Q14677 625 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms