RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 DUX4L5P0CJ88 424 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 DUX4L6P0CJ89 424 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 DUX4L7P0CJ90 424 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 GSK3AP49840 483 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 SRSF4Q08170 494 aaKnown RBP15.29■□□□□ 0.04
COL9A1-201ENST00000320755 PAN3Q58A45 887 aaKnown RBP15.29■□□□□ 0.04
COL9A1-201ENST00000320755 MOB3CQ70IA8 216 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 C6orf201Q7Z4U5 140 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 OR1S2Q8NGQ3 325 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 OR13G1Q8NGZ3 307 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 PAQR8Q8TEZ7 354 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 RRNAD1Q96FB5 475 aaKnown RBP15.29■□□□□ 0.04
COL9A1-201ENST00000320755 ARPC5LQ9BPX5 153 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 DUX4Q9UBX2 424 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 B3GALT1Q9Y5Z6 326 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 DKK1O94907 266 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 RIPPLY1Q0D2K3 151 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 FAHD2BQ6P2I3 314 aaPredicted RBP15.29■□□□□ 0.04
COL9A1-201ENST00000320755 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.29■□□□□ 0.04
COL9A1-201ENST00000320755 TMEM200AQ86VY9 491 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 FAHD2AQ96GK7 314 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 HDHD3Q9BSH5 251 aaPredicted RBP15.29■□□□□ 0.04
COL9A1-201ENST00000320755 NELFAQ9H3P2 528 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 FBLN5Q9UBX5 448 aa15.29■□□□□ 0.04
COL9A1-201ENST00000320755 H0YIZ8 118 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 MFNGO00587 321 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 CDK2AP1O14519 115 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 ANGPTL7O43827 346 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 HLA-GP17693 338 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 TBPP20226 339 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 MPZP25189 248 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 PPIAP62937 165 aaKnown RBP15.28■□□□□ 0.04
COL9A1-201ENST00000320755 ENDOGQ14249 297 aaKnown RBP15.28■□□□□ 0.04
COL9A1-201ENST00000320755 ANKRD55Q3KP44 614 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 ZNF468Q5VIY5 522 aaPredicted RBP15.28■□□□□ 0.04
COL9A1-201ENST00000320755 GTPBP8Q8N3Z3 284 aaPredicted RBP15.28■□□□□ 0.04
COL9A1-201ENST00000320755 ULBP2Q9BZM5 246 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 GPR173Q9NS66 373 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 PCDHB10Q9UN67 800 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 TNRC18O15417 2968 aaPredicted RBP15.28■□□□□ 0.04
COL9A1-201ENST00000320755 UMODP07911 640 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 TMEM225BP0DP42 221 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 TAS2R31P59538 309 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 ECH1Q13011 328 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 RSPO1Q2MKA7 263 aaPredicted RBP15.28■□□□□ 0.04
COL9A1-201ENST00000320755 CHRFAM7AQ494W8 412 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 TMED6Q8WW62 240 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 WNT2BQ93097 391 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 LRRC46Q96FV0 321 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 CDC6Q99741 560 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 RNF126Q9BV68 326 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 M0R135 149 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 DHHO43323 396 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 F10P00742 488 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 SFTPBP07988 381 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 S100A10P60903 97 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 MC2RQ01718 297 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 OPN5Q6U736 354 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 YRDCQ86U90 279 aaKnown RBP15.28■□□□□ 0.04
COL9A1-201ENST00000320755 OR5AP2Q8NGF4 316 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 ZNF799Q96GE5 643 aa15.28■□□□□ 0.04
COL9A1-201ENST00000320755 A0A0J9YW62 118 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 MSGN1A6NI15 193 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 ZIC3O60481 467 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 HPNP05981 417 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 ADH6P28332 368 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 SNAI3Q3KNW1 292 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 CCDC157Q569K6 752 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 ARRDC1Q8N5I2 433 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 OR9K2Q8NGE7 335 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 CLDN23Q96B33 292 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 OR10C1Q96KK4 312 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 RTBDNQ9BSG5 229 aaPredicted RBP15.27■□□□□ 0.04
COL9A1-201ENST00000320755 BARX1Q9HBU1 254 aaPredicted RBP15.27■□□□□ 0.04
COL9A1-201ENST00000320755 OR5AC2Q9NZP5 309 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 FLVCR1Q9Y5Y0 555 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 KNTC1P50748 2209 aa15.27■□□□□ 0.04
COL9A1-201ENST00000320755 IGHV1-45A0A0A0MS14 117 aa15.27■□□□□ 0.03
COL9A1-201ENST00000320755 FAM230AA0A1W2PPH8 454 aa15.27■□□□□ 0.03
COL9A1-201ENST00000320755 GP1BAP07359 652 aa15.27■□□□□ 0.03
COL9A1-201ENST00000320755 SUPT4H1P63272 117 aaKnown RBP15.27■□□□□ 0.03
COL9A1-201ENST00000320755 H3F3AP84243 136 aa15.27■□□□□ 0.03
COL9A1-201ENST00000320755 ZSCAN4Q8NAM6 433 aaPredicted RBP15.27■□□□□ 0.03
COL9A1-201ENST00000320755 OR51F2Q8NH61 342 aa15.27■□□□□ 0.03
COL9A1-201ENST00000320755 MAFAQ8NHW3 353 aaPredicted RBP15.27■□□□□ 0.03
COL9A1-201ENST00000320755 HPF1Q9NWY4 346 aa15.27■□□□□ 0.03
COL9A1-201ENST00000320755 HS3ST3B1Q9Y662 390 aa15.27■□□□□ 0.03
COL9A1-201ENST00000320755 IGKV1D-8A0A087WSZ0 117 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 DBX1A6NMT0 343 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 DHRS3O75911 302 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 SFT2D2O95562 160 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 SSR4P51571 173 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 ZNF273Q14593 569 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 KCNMB1Q16558 191 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 BRICD5Q6PL45 260 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 RPS19BP1Q86WX3 136 aaKnown RBP15.26■□□□□ 0.03
COL9A1-201ENST00000320755 TMEM17Q86X19 198 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 FBXO17Q96EF6 278 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 OCSTAMPQ9BR26 566 aa15.26■□□□□ 0.03
COL9A1-201ENST00000320755 PECRQ9BY49 303 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms