RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 WNT8BQ93098 351 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM19Q96HH6 336 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 SRSF8Q9BRL6 282 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 GEMIN7Q9H840 131 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 KCNK12Q9HB15 430 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 DUSP13Q9UII6 198 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 TRAV8-6A0A0B4J262 113 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 P01737 135 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 MDKP21741 143 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 HRH1P35367 487 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 MRPS21P82921 87 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 COL9A3Q14050 684 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 GDPGP1Q6ZNW5 385 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 RBM45Q8IUH3 476 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 DUSP18Q8NEJ0 188 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 DNERQ8NFT8 737 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 SLCO1C1Q9NYB5 712 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 TOMM7Q9P0U1 55 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 H3BP45 60 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 DUX1O43812 170 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 GPX3P22352 226 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 WNT4P56705 351 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 RPL27P61353 136 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 CTAG1AP78358 180 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF85Q03923 595 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM240Q5SV17 173 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 UNQ5815/PRO19632Q6UWF5 114 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 STAC2Q6ZMT1 411 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 OR10V1Q8NGI7 309 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 OR10S1Q8NGN2 331 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 OR4X1Q8NH49 305 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF296Q8WUU4 475 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 EDAQ92838 391 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 KIAA1191Q96A73 305 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC25A2Q9BXI2 301 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 TTYH3Q9C0H2 523 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 RAB33BQ9H082 229 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 SERGEFQ9UGK8 458 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 MRPS28Q9Y2Q9 187 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 MAP2P11137 1827 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 SNURFLB1AK76 121 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 C17orf105B2RV13 164 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF737O75373 536 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 TCRBP04435 133 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 NPSR1Q6W5P4 371 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 GLCCI1Q86VQ1 547 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 KIR3DL3Q8N743 410 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 EMG1Q92979 244 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 WDR34Q96EX3 536 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 PIK3IP1Q96FE7 263 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 Q9N2K0 584 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 CES1P1Q9UKY3 287 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 V9GYY9 64 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 MROH1Q8NDA8 1641 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 JCADQ9P266 1359 aa6.92□□□□□ -1.3
LIMCH1-201ENST00000313860 LOC102725191A0A1B0GVB3 256 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 CDKN1BP46527 198 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 LYZP61626 148 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 APOBEC3HQ6NTF7 200 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 PODNL1Q6PEZ8 512 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 OSCARQ8IYS5 282 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 NUP43Q8NFH3 380 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM158Q8WZ71 300 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 RND1Q92730 232 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 ADAMTS10Q9H324 1103 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 UQCR10Q9UDW1 63 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 TRAV5A0A0B4J249 113 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 MBPP02686 304 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 PNLIPRP2P54317 469 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 SNRPFP62306 86 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 SPINK9Q5DT21 86 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 TIMM23BQ5SRD1 257 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF485Q8NCK3 441 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 OR1B1Q8NGR6 318 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 ST6GALNAC6Q969X2 333 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 MRPS24Q96EL2 167 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM106BQ9NUM4 274 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 PCOLCE2Q9UKZ9 415 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 KDM6AO15550 1401 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC15A5A6NIM6 579 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 H3BUT2 72 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 P2RY10O00398 339 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 PI15O43692 258 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 ESDP10768 282 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 TNFRSF1BP20333 461 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 HTR5AP47898 357 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 LMAN2Q12907 356 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 LGALSLQ3ZCW2 172 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 FNDC7Q5VTL7 733 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 MFSD4AQ8N468 514 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 ORAI2Q96SN7 254 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 CLTCQ00610 1675 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 hADV38S2A0JD32 116 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 GSTZ1O43708 216 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 CD5LO43866 347 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 SELENOFO60613 162 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 C1SP09871 688 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 SDHBP21912 280 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 PMELP40967 661 aa6.91□□□□□ -1.3
LIMCH1-201ENST00000313860 DUSP2Q05923 314 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms