RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 B4DEV8 164 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 TBX19O60806 448 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 HRASP01112 189 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 KRASP01116 189 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF121P58317 390 aaPredicted RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 METRNLQ641Q3 311 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 KCNE4Q8WWG9 221 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 PCDHGA9Q9Y5G4 932 aaKnown RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 DDX60Q8IY21 1712 aaKnown RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 SLC25A5P05141 298 aaKnown RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF865P0CJ78 1059 aaPredicted RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 CD22P20273 847 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 SLC25A35Q3KQZ1 300 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 COX19Q49B96 90 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 SLC16A13Q7RTY0 426 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 TMEM56Q96MV1 263 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 MBLAC1A4D2B0 266 aaPredicted RBP12.52□□□□□ -0.4
CSPG4-201ENST00000308508 TARM1B6A8C7 271 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 MASP2O00187 686 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.52□□□□□ -0.4
CSPG4-201ENST00000308508 PP6455Q8WZ26 134 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 RAB24Q969Q5 203 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 MS4A6EQ96DS6 147 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 NPAS1Q99742 590 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 TMEM147Q9BVK8 224 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 LPAR3Q9UBY5 353 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 HSPB8Q9UJY1 196 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 FIGNL2A6NMB9 653 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 GJA4P35212 333 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 OLIG3Q7RTU3 272 aa12.52□□□□□ -0.4
CSPG4-201ENST00000308508 UBE2ZQ9H832 354 aaPredicted RBP12.52□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF25P17030 456 aaPredicted RBP12.52□□□□□ -0.41
CSPG4-201ENST00000308508 DND1Q8IYX4 353 aaKnown RBP12.52□□□□□ -0.41
CSPG4-201ENST00000308508 LSMEM1Q8N8F7 131 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 ZC3HAV1LQ96H79 300 aaKnown RBP12.52□□□□□ -0.41
CSPG4-201ENST00000308508 FKBP11Q9NYL4 201 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 MAP1LC3B2A6NCE7 125 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 H3BVH4 76 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 CD99P14209 185 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 RHOBP62745 196 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 FZD2Q14332 565 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 ACSM6Q6P461 480 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 DLK2Q6UY11 383 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 MAMSTRQ6ZN01 415 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 MAP1LC3BQ9GZQ8 125 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 KCNK15Q9H427 330 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 IGFBP7Q16270 282 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 MRM1Q6IN84 353 aaKnown RBP12.52□□□□□ -0.41
CSPG4-201ENST00000308508 SCGB1D4Q6XE38 83 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 OR5C1Q8NGR4 320 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 DAPP1Q9UN19 280 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 TNFRSF10CO14798 259 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 AVPR2P30518 371 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 B3GNTL1Q67FW5 361 aaPredicted RBP12.52□□□□□ -0.41
CSPG4-201ENST00000308508 SLC25A26Q70HW3 274 aa12.52□□□□□ -0.41
CSPG4-201ENST00000308508 CRISP2P16562 243 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 OR10J1P30954 320 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 BTG2P78543 158 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 ZADH2Q8N4Q0 377 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 CRYGNQ8WXF5 182 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 ZNF552Q9H707 407 aaPredicted RBP12.51□□□□□ -0.41
CSPG4-201ENST00000308508 P4HTMQ9NXG6 502 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 ZNF749O43361 778 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 CLDN15P56746 228 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 LPAL2Q16609 132 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 ST3GAL2Q16842 350 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 OR2T10Q8NGZ9 312 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 TP53RKQ96S44 253 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 NAT8Q9UHE5 227 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 OTOFQ9HC10 1997 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 TRGV10A0A0A0MS01 117 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 OCIAD1Q9NX40 245 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 TIAM2Q8IVF5 1701 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 BCL3P20749 454 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 SLC38A11Q08AI6 406 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 DHRS13Q6UX07 377 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 OR1L4Q8NGR5 311 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 SLCO1C1Q9NYB5 712 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 SLC25A37Q9NYZ2 338 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 SEMG1P04279 462 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 THBS4P35443 961 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 OR1L3Q8NH93 324 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 BCL2L10Q9HD36 194 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 RASL12Q9NYN1 266 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 SPINK4O60575 86 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 TSPAN12O95859 305 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 EPHA2P29317 976 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 AQP6Q13520 282 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 CLPPQ16740 277 aaPredicted RBP12.51□□□□□ -0.41
CSPG4-201ENST00000308508 SLIRPQ9GZT3 109 aaKnown RBP12.51□□□□□ -0.41
CSPG4-201ENST00000308508 OR2T8A6NH00 312 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 OR3A1P47881 315 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 SIGLEC11Q96RL6 698 aa12.51□□□□□ -0.41
CSPG4-201ENST00000308508 ONECUT2O95948 504 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 GP1BAP07359 652 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 CHRNA7P36544 502 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 RSRP1Q9BUV0 290 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 TINAGL1Q9GZM7 467 aaPredicted RBP12.5□□□□□ -0.41
CSPG4-201ENST00000308508 RGPD2P0DJD1 1756 aa12.5□□□□□ -0.41
CSPG4-201ENST00000308508 PCBP3P57721 371 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms