RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 GABRA1P14867 456 aa15.6■□□□□ 0.09
SYNPO-201ENST00000307662 ST6GAL1P15907 406 aa15.6■□□□□ 0.09
SYNPO-201ENST00000307662 ERVFC1-1P60608 527 aa15.6■□□□□ 0.09
SYNPO-201ENST00000307662 LSRQ86X29 649 aaPredicted RBP15.6■□□□□ 0.09
SYNPO-201ENST00000307662 SCCPDHQ8NBX0 429 aa15.6■□□□□ 0.09
SYNPO-201ENST00000307662 TTC9Q92623 222 aa15.6■□□□□ 0.09
SYNPO-201ENST00000307662 NGBQ9NPG2 151 aa15.6■□□□□ 0.09
SYNPO-201ENST00000307662 CACFD1Q9UGQ2 172 aa15.6■□□□□ 0.09
SYNPO-201ENST00000307662 PTBP3O95758 552 aaKnown RBP15.59■□□□□ 0.09
SYNPO-201ENST00000307662 ONECUT2O95948 504 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 GP1BAP07359 652 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 SHHQ15465 462 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 NKAIN1Q4KMZ8 207 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 SEZ6L2Q6UXD5 910 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 RPS19BP1Q86WX3 136 aaKnown RBP15.59■□□□□ 0.09
SYNPO-201ENST00000307662 ZDHHC23Q8IYP9 409 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 FBXL6Q8N531 539 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 TMEM104Q8NE00 496 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 PP6455Q8WZ26 134 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 CCDC74BQ96LY2 380 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 CHST6Q9GZX3 395 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 N4BP2Q86UW6 1770 aaPredicted RBP15.59■□□□□ 0.09
SYNPO-201ENST00000307662 ELOA3CA0A087WX78 387 aaPredicted RBP15.59■□□□□ 0.09
SYNPO-201ENST00000307662 TCRBV16S1A1N1A0A5B0 115 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 SULT1A3P0DMM9 295 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 SULT1A4P0DMN0 295 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 ARR3P36575 388 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 CD200P41217 278 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 Q7L0L9 218 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 C17orf47Q8NEP4 570 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 ADGRG7Q96K78 797 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 RSRP1Q9BUV0 290 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 A0A1W2PPH5 198 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 LRRC30A6NM36 301 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 HIST1H1DP16402 221 aaKnown RBP15.59■□□□□ 0.09
SYNPO-201ENST00000307662 KCNAB1Q14722 419 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 TMEM241Q24JQ0 296 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 SP6Q3SY56 376 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 VWA2Q5GFL6 755 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 DECR2Q9NUI1 292 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 H0Y8X5 98 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 ITGBL1O95965 494 aaPredicted RBP15.59■□□□□ 0.09
SYNPO-201ENST00000307662 HAAOP46952 286 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 COTL1Q14019 142 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 C20orf141Q9NUB4 165 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 OR51B4Q9Y5P0 310 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 ARAP2Q8WZ64 1704 aa15.59■□□□□ 0.09
SYNPO-201ENST00000307662 C5orf49A4QMS7 147 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 SPRY1O43609 319 aaPredicted RBP15.58■□□□□ 0.09
SYNPO-201ENST00000307662 FAHP16930 419 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 LHFPL5Q8TAF8 219 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 C4orf45Q96LM5 186 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 GPR137Q96N19 417 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 ASB16Q96NS5 453 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 MS4A10Q96PG2 267 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 KLRC4-KLRK1H3BQV0 150 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 NRG2O14511 850 aaPredicted RBP15.58■□□□□ 0.09
SYNPO-201ENST00000307662 CXCL3P19876 107 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 USF1P22415 310 aaPredicted RBP15.58■□□□□ 0.09
SYNPO-201ENST00000307662 GLRA1P23415 457 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 ASCL1P50553 236 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 FUT6P51993 359 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 PCBP3P57721 371 aaKnown RBP15.58■□□□□ 0.09
SYNPO-201ENST00000307662 CDONQ4KMG0 1287 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 FAM209AQ5JX71 171 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 YRDCQ86U90 279 aaKnown RBP15.58■□□□□ 0.09
SYNPO-201ENST00000307662 MIXL1Q9H2W2 232 aa15.58■□□□□ 0.09
SYNPO-201ENST00000307662 TERTO14746 1132 aaKnown RBP15.58■□□□□ 0.08
SYNPO-201ENST00000307662 PRKNO60260 465 aaPredicted RBP15.58■□□□□ 0.08
SYNPO-201ENST00000307662 CLEC3BP05452 202 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 INPP5JQ15735 1006 aaPredicted RBP15.58■□□□□ 0.08
SYNPO-201ENST00000307662 ETFDHQ16134 617 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 RTL8BQ17RB0 113 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 LINC00696Q6ZRV3 163 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 C19orf35Q6ZS72 473 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 KIAA1551Q9HCM1 1747 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 PRRT4C9JH25 899 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 CST2P09228 141 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 PGA3P0DJD8 388 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 SLC37A1P57057 533 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 PMS2P11Q13670 270 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 DGAT2L6Q6ZPD8 337 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 C11orf40Q8WZ69 217 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 SIPA1L3O60292 1781 aaPredicted RBP15.58■□□□□ 0.08
SYNPO-201ENST00000307662 BCORQ6W2J9 1755 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 DBX1A6NMT0 343 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 GPANK1O95872 356 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 RPL29P47914 159 aaKnown RBP15.58■□□□□ 0.08
SYNPO-201ENST00000307662 PATE1Q8WXA2 126 aa15.58■□□□□ 0.08
SYNPO-201ENST00000307662 KTI12Q96EK9 354 aaPredicted RBP15.58■□□□□ 0.08
SYNPO-201ENST00000307662 GALR2O43603 387 aaPredicted RBP15.57■□□□□ 0.08
SYNPO-201ENST00000307662 CNIH1O95406 144 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 PRR27Q6MZM9 219 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 Q6ZNB5 142 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 NOXO1Q8NFA2 376 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 IDSB3KWA1 339 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 CNN1P51911 297 aaKnown RBP15.57■□□□□ 0.08
SYNPO-201ENST00000307662 OR11H7Q8NGC8 314 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 ARHGAP5-AS1Q96IT6 56 aa15.57■□□□□ 0.08
SYNPO-201ENST00000307662 SEC11CQ9BY50 192 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms