RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GDF7Q7Z4P5 450 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SLC25A42Q86VD7 318 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 NAT6Q93015 286 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 FAM131CQ96AQ9 280 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 PSMG3Q9BT73 122 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 DUSP23Q9BVJ7 150 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 RAB6CQ9H0N0 254 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 HRASLS2Q9NWW9 162 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 VAX2Q9UIW0 290 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 PTPRQQ9UMZ3 2332 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 MED12LQ86YW9 2145 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 TCRBV21S2A2A0A5A6 115 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CYB5R3P00387 301 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 FOLR1P15328 257 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF93P35789 620 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 PPP1CCP36873 323 aaKnown RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SLC6A11P48066 632 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 COMPP49747 757 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 OR7E24Q6IFN5 339 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 LHFPL2Q6ZUX7 228 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 LINC01599Q8WXQ3 324 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 HEYLQ9NQ87 328 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 TIMM9Q9Y5J7 89 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CUL9Q8IWT3 2517 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 A0A1W2PQD3 144 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 A6NDN8 102 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CST2P09228 141 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 HAAOP46952 286 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 RPS24P62847 133 aaKnown RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CACNG7P62955 275 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 FAM189BP81408 668 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 RELBQ01201 579 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 LTC4SQ16873 150 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 RRN3P1Q2M238 152 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SFRP4Q6FHJ7 346 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 Q6ZN92 141 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 NUFIP2Q7Z417 695 aaKnown RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 ARIH2OSQ8N7S6 290 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 ADTRPQ96IZ2 230 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 IMMP2LQ96T52 175 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CHRNA10Q9GZZ6 450 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CALHM2Q9HA72 323 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SPHK2Q9NRA0 654 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 HDGFL3Q9Y3E1 203 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 UPK1AO00322 258 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 OR5G3P0C626 314 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 GLULP15104 373 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CDX1P47902 265 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CTXN1P60606 82 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 PRDX4Q13162 271 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 AGERQ15109 404 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SLC36A2Q495M3 483 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 NHLRC3Q5JS37 347 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 COL5A1-AS1Q5SY13 56 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 FAM182BQ5T319 152 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SAMD7Q7Z3H4 446 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 LRP11Q86VZ4 500 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 OR8D4Q8NGM9 314 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 OR2G2Q8NGZ5 317 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM101Q96IK0 257 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 NXF5Q9H1B4 397 aaKnown RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 NAT8Q9UHE5 227 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 TNFSF18Q9UNG2 199 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM269A0A1B0GVZ9 245 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 K7ERQ8 282 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 M0R2Z0 102 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 PTP4A3O75365 173 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 F7P08709 466 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 DPP4P27487 766 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 G6PCP35575 357 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 KLF9Q13886 244 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 PRRT3Q5FWE3 981 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SCD5Q86SK9 330 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 MRGPRGQ86SM5 289 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 THNSL2Q86YJ6 484 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF547Q8IVP9 402 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SFTPA2Q8IWL1 248 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SFTPA1Q8IWL2 248 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 METTL27Q8N6F8 245 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 BEND2Q8NDZ0 799 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 SLC35A4Q96G79 324 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 OR5M11Q96RB7 305 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 MRPL37Q9BZE1 423 aaKnown RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 OOEPA6NGQ2 149 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 M0R082 166 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 M0R3E3 92 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 LMX1BO60663 402 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CRHP06850 196 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 BLVRBP30043 206 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 ACVRL1P37023 503 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 NKX2-1P43699 371 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 PPP1CAP62136 330 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 NHLH2Q02577 135 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 INPP5JQ15735 1006 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CEBPEQ15744 281 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 ADIRFQ15847 76 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 CCSMST1Q4G0I0 132 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 H2BFWTQ7Z2G1 175 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF738Q8NE65 137 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 OR2AE1Q8NHA4 323 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms