RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DNAH12Q6ZR08 3092 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 AHCTF1Q8WYP5 2266 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 SSSCA1O60232 199 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 HTR5AP47898 357 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 SRYQ05066 204 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 GRINAQ7Z429 371 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 SLC38A9Q8NBW4 561 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 TMPRSS13Q9BYE2 586 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 ACAD8Q9UKU7 415 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 COLQQ9Y215 455 aaPredicted RBP13.76□□□□□ -0.21
SHH-201ENST00000297261 CEP350Q5VT06 3117 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 ANAPC1Q9H1A4 1944 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 ABCD4O14678 606 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 PDGFBP01127 241 aaPredicted RBP13.75□□□□□ -0.21
SHH-201ENST00000297261 LIMS1P48059 325 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 CRYBA2P53672 197 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 FAM185AQ8N0U4 392 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 SLC22A18ASQ8N1D0 253 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 C15orf54Q8N8G6 183 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 PSMF1Q92530 271 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 FBXL17Q9UF56 701 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 GDF2Q9UK05 429 aaPredicted RBP13.75□□□□□ -0.21
SHH-201ENST00000297261 EFNB2P52799 333 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 ZNF528Q3MIS6 628 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 THNSL2Q86YJ6 484 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 BTBD17A6NE02 478 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 RAB27BO00194 218 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 HLA-HP01893 362 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 MBP02144 154 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 ECI1P42126 302 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 RFLNBQ8N5W9 214 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 DTWD2Q8NBA8 298 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 EDEM2Q9BV94 578 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 SEC11CQ9BY50 192 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 FRRS1LQ9P0K9 344 aa13.75□□□□□ -0.21
SHH-201ENST00000297261 CER1O95813 267 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 GUSBP08236 651 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 GLB1P16278 677 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 H3F3AP84243 136 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 HSF1Q00613 529 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 FAM53BQ14153 422 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 PDLIM3Q53GG5 364 aaPredicted RBP13.74□□□□□ -0.21
SHH-201ENST00000297261 PLXDC2Q6UX71 529 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 TSLPQ969D9 159 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 ZNF845Q96IR2 970 aaPredicted RBP13.74□□□□□ -0.21
SHH-201ENST00000297261 STRADBQ9C0K7 418 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 GPR173Q9NS66 373 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 HAO2Q9NYQ3 351 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 OR14J1Q9UGF5 321 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 TP53TG5Q9Y2B4 290 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 IGHV5-51A0A0C4DH38 117 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 TRBV11-1A0A0K0K1C0 115 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 A0A1B0GX78 115 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 GSTP1P09211 210 aaKnown RBP13.74□□□□□ -0.21
SHH-201ENST00000297261 ENPP1P22413 925 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 AADACP22760 399 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 MSX1P28360 303 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 FAM181AQ8N9Y4 354 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 CA5BP1Q8WTZ4 195 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 MMP25Q9NPA2 562 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 MMACHCQ9Y4U1 282 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 CD79AP11912 226 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 ABOP16442 354 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 BCKDHBP21953 392 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 PSMB3P49720 205 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 SLC37A1P57057 533 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 TMPPEQ6ZT21 453 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 INTS12Q96CB8 462 aaKnown RBP13.74□□□□□ -0.21
SHH-201ENST00000297261 SMIM7Q9BQ49 75 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 PBOV1Q9GZY1 135 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 SLC35B3Q9H1N7 401 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 TXNIPQ9H3M7 391 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 LPAR3Q9UBY5 353 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 WSB1Q9Y6I7 421 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 IGHV3-20A0A0C4DH32 117 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 NPBWR1P48145 328 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 C17orf67Q0P5P2 114 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 PRSS54Q6PEW0 395 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 ZNF429Q86V71 674 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 LHX4Q969G2 390 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 GNPNAT1Q96EK6 184 aaPredicted RBP13.74□□□□□ -0.21
SHH-201ENST00000297261 MRPS24Q96EL2 167 aaKnown RBP13.74□□□□□ -0.21
SHH-201ENST00000297261 TLNRD1Q9H1K6 362 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 PCED1AQ9H1Q7 454 aa13.74□□□□□ -0.21
SHH-201ENST00000297261 TRAPPC2LH3BP13 241 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 RNF151Q2KHN1 245 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 TMEM37Q8WXS4 190 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 RGP1Q92546 391 aaPredicted RBP13.73□□□□□ -0.21
SHH-201ENST00000297261 ABI3Q9P2A4 366 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 A0A1W2PPE2 198 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 NXPH1P58417 271 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 ATRAIDQ6UW56 229 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 C5orf46Q6UWT4 87 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 DOK3Q7L591 496 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 RABEPKQ7Z6M1 372 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 TVP23CQ96ET8 276 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 MOGAT1Q96PD6 335 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 KLF15Q9UIH9 416 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 OSGIN2Q9Y236 505 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 A0A087X0M5 115 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms