RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 HSD11B1LQ7Z5J1 315 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 RDH5Q92781 318 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 SOX21Q9Y651 276 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 R4GMQ9 66 aa12.63□□□□□ -0.39
CCDC88A-201ENST00000263630 HOXC11O43248 304 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 BTF3P20290 206 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 CST5P28325 142 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 OR10J1P30954 320 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 CLDN20P56880 219 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 D2HGDHQ8N465 521 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 C12orf76Q8N812 135 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 H3BNC9 293 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 K7EQS6 105 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 TMPRSS11DO60235 418 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 CAMPP49913 170 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 TDRD6O60522 2096 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 AQP6Q13520 282 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 OR51E1Q8TCB6 317 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 TRIP12Q14669 1992 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 SOX15O60248 233 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 ALOX12BO75342 701 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 OPRM1P35372 400 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 CLDN15P56746 228 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 NPEPL1Q8NDH3 523 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 SMIM19Q96E16 107 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF778Q96MU6 729 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 TEAD3Q99594 435 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 MMP24Q9Y5R2 645 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 OR2A25A4D2G3 310 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 SDCBPO00560 298 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 FAM74A3Q4VXF1 159 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 A0A1B0GVG6 124 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 B4DEV8 164 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 Q9N2K0 584 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 FNDC7Q5VTL7 733 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 MARCH3Q86UD3 253 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 OR5AU1Q8NGC0 362 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 WSB1Q9Y6I7 421 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 P01737 135 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 S1PR5Q9H228 398 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 AKIRIN1Q9H9L7 192 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 UBTD1Q9HAC8 227 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 CSNK1G1Q9HCP0 422 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 APC2O95996 2303 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 ADGRB2O60241 1585 aa12.62□□□□□ -0.39
CCDC88A-201ENST00000263630 FZD2Q14332 565 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF511Q8NB15 262 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 PFN4Q8NHR9 129 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 ADAT3Q96EY9 351 aaPredicted RBP12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 T-ENOLP0DO92 83 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 C6orf15Q6UXA7 325 aaPredicted RBP12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 MAGT1Q9H0U3 335 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 TAAR3PQ9P1P4 343 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 SLC6A1P30531 599 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 HTR3DQ70Z44 454 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 IL36GQ9NZH8 169 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 IVDP26440 423 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 HOXD13P35453 343 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 PPIAP62937 165 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 SNRPNP63162 240 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 HSF5Q4G112 596 aaPredicted RBP12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 OR4A47Q6IF82 309 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 C11orf87Q6NUJ2 197 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 DEFB108BQ8NET1 73 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 PTGER1P34995 402 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 TMEM183AQ8IXX5 376 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 C10orf126Q8N4M7 172 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 OR1B1Q8NGR6 318 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 FAHD2AQ96GK7 314 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 GPR87Q9BY21 358 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 ZC3H12DA2A288 527 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 DSCR3O14972 297 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 HAND1O96004 215 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 CST4P01036 141 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 GABARAPL3Q9BY60 117 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 PRSS56P0CW18 603 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 CD96P40200 585 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 ANKRD55Q3KP44 614 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 LANCL1O43813 399 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 ARRB2P32121 409 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 NRG4Q8WWG1 115 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 POM121Q96HA1 1249 aa12.61□□□□□ -0.39
CCDC88A-201ENST00000263630 PXDNQ92626 1479 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 IGHV3-9P01782 118 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 CSF2RBP32927 897 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF738Q8NE65 137 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 SRD5A3Q9H8P0 318 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 ST8SIA1Q92185 356 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 KISS1RQ969F8 398 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 OXGR1Q96P68 337 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 SIT1Q9Y3P8 196 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 ZNF815PA8K554 130 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 SPINK4O60575 86 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 TMEM229BQ8NBD8 167 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 BVESQ8NE79 360 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 DYNLRB2Q8TF09 96 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 BADQ92934 168 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 NAT8Q9UHE5 227 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 CES1P1Q9UKY3 287 aa12.6□□□□□ -0.39
CCDC88A-201ENST00000263630 PGA4P0DJD7 388 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms