RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 GPR12P47775 334 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 OR2B8PP59922 312 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 FMODQ06828 376 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 MPPED2Q15777 294 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.64□□□□□ -0.87
CD44-201ENST00000263398 AHCTF1Q8WYP5 2266 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 C2CD4DB7Z1M9 353 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 WISP3O95389 354 aaPredicted RBP9.64□□□□□ -0.87
CD44-201ENST00000263398 PPIAP62937 165 aaKnown RBP9.64□□□□□ -0.87
CD44-201ENST00000263398 ZNF787Q6DD87 383 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 MRM1Q6IN84 353 aaKnown RBP9.64□□□□□ -0.87
CD44-201ENST00000263398 MUC20Q8N307 709 aaPredicted RBP9.64□□□□□ -0.87
CD44-201ENST00000263398 OR1F12Q8NHA8 337 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 APOBEC3DQ96AK3 386 aaPredicted RBP9.64□□□□□ -0.87
CD44-201ENST00000263398 SLC35E1Q96K37 410 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 PRRX2Q99811 253 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 RHOFQ9HBH0 211 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 FIGNL2A6NMB9 653 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 HIST1H1DP16402 221 aaKnown RBP9.64□□□□□ -0.87
CD44-201ENST00000263398 COX5AP20674 150 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 SLC25A30Q5SVS4 291 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 CDC20BQ86Y33 519 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 C10orf111Q8N326 155 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 ZNF561Q8N587 486 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 COMMD1Q8N668 190 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 EDARADDQ8WWZ3 215 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 MAP6Q96JE9 813 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 OPA3Q9H6K4 179 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 HIF1ANQ9NWT6 349 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 ZNF391Q9UJN7 358 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 LOXL2Q9Y4K0 774 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 ICE1Q9Y2F5 2266 aa9.64□□□□□ -0.87
CD44-201ENST00000263398 PAPPA2Q9BXP8 1791 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 IGHV5-51A0A0C4DH38 117 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 IGHV3-64DA0A0J9YX35 117 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 A0A1W2PPH5 198 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 LINC01387J3KSC0 135 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 RAB27BO00194 218 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 TERTO14746 1132 aaKnown RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 DTYMKP23919 212 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 CD96P40200 585 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 GSK3AP49840 483 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 FUT7Q11130 342 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 KISS1Q15726 138 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 AARDQ4LEZ3 155 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 OR2B11Q5JQS5 317 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 SCCPDHQ8NBX0 429 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 RXFP4Q8TDU9 374 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 ROBO4Q8WZ75 1007 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 CABLES2Q9BTV7 478 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 RPP25Q9BUL9 199 aaKnown RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 NDRG3Q9UGV2 375 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 TMEM272A0A1B0GTI8 110 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 GPR31O00270 319 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 CT62P0C5K7 136 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 CD300CQ08708 224 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 HLXQ14774 488 aaPredicted RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 ACOT6Q3I5F7 207 aaPredicted RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 CBLN3Q6UW01 205 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 SLC38A6Q8IZM9 456 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 CLRN3Q8NCR9 226 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 CADM4Q8NFZ8 388 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 ST6GAL2Q96JF0 529 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 TSPAN32Q96QS1 320 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 S1PR3Q99500 378 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 SMIM7Q9BQ49 75 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 ZNF768Q9H5H4 540 aaKnown RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 ZNF331Q9NQX6 463 aaPredicted RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 PSENENQ9NZ42 101 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 MBD1Q9UIS9 605 aaPredicted RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 PRSS44E7EML9 344 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 IL2RAP01589 272 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 ZNF718Q3SXZ3 478 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 CARFQ8N187 725 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 OR4F5Q8NH21 305 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 LURAP1Q96LR2 239 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 OR4F4Q96R69 305 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 RAB18Q9NP72 206 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 CACFD1Q9UGQ2 172 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 COL11A1P12107 1806 aaPredicted RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 A0A1B0GTH9 108 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 OGG1O15527 345 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 SPRY1O43609 319 aaPredicted RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 CST4P01036 141 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 IGHA1P01876 353 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 IAPPP10997 89 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 ZP3P21754 424 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 PRSS42Q7Z5A4 293 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 OR52N4Q8NGI2 321 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 OR4D11Q8NGI4 311 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 EXTL1Q92935 676 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 RPUSD4Q96CM3 377 aaKnown RBP9.63□□□□□ -0.87
CD44-201ENST00000263398 BOD1Q96IK1 185 aa9.63□□□□□ -0.87
CD44-201ENST00000263398 SIPA1L1O43166 1804 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 ANKRD20A5PA0PJZ0 165 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 K7EQM0 130 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 CTLA4P16410 223 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 LGALS4P56470 323 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 TAS2R45P59539 299 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 PPP1R1AQ13522 171 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms