RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SRD5A2P31213 254 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 MEOX1P50221 254 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 TAGLNQ01995 201 aaKnown RBP17.18■□□□□ 0.34
UPF1-201ENST00000262803 ADAT1Q9BUB4 502 aaKnown RBP17.18■□□□□ 0.34
UPF1-201ENST00000262803 OR4E1P0C645 316 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 RRASP10301 218 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 FABP6P51161 128 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 YBX1P67809 324 aaKnown RBP17.18■□□□□ 0.34
UPF1-201ENST00000262803 TMEM104Q8NE00 496 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 NUDT16L1Q9BRJ7 211 aaKnown RBP17.18■□□□□ 0.34
UPF1-201ENST00000262803 ZFP64Q9NPA5 681 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 CNN1P51911 297 aaKnown RBP17.18■□□□□ 0.34
UPF1-201ENST00000262803 ZNF680Q8NEM1 530 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 CXorf58Q96LI9 332 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 KLK11Q9UBX7 282 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 SMIM17P0DL12 118 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 OR13C7P0DN81 318 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 SNRPNP63162 240 aaKnown RBP17.18■□□□□ 0.34
UPF1-201ENST00000262803 ZNF793Q6ZN11 406 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 TMPRSS11FQ6ZWK6 438 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 OTOSQ8NHW6 89 aa17.18■□□□□ 0.34
UPF1-201ENST00000262803 PI3P19957 117 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 NXPH1P58417 271 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 HFEQ30201 348 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 C1orf210Q8IVY1 113 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 EID2BQ96D98 161 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 FAM122AQ96E09 287 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 RAB1BQ9H0U4 201 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 SLC17A2O00624 439 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 DEFA6Q01524 100 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 EXOSC2Q13868 293 aaKnown RBP17.17■□□□□ 0.34
UPF1-201ENST00000262803 OR10AD1Q8NGE0 317 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 ZNF629Q9UEG4 869 aaPredicted RBP17.17■□□□□ 0.34
UPF1-201ENST00000262803 PRRX1P54821 245 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 ZNF90Q03938 601 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 TOR2AQ5JU69 321 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 OR8U1Q8NH10 309 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 ROBO4Q8WZ75 1007 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 LHX4Q969G2 390 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 WDR34Q96EX3 536 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 UMAD1C9J7I0 102 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 XRCC3O43542 346 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 OPRM1P35372 400 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 ANKRD37Q7Z713 158 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 GAB2Q9UQC2 676 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 OR6C68A6NDL8 312 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 ALG1L2C9J202 215 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 SULT1A3P0DMM9 295 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 SULT1A4P0DMN0 295 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 LILRA6Q6PI73 481 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 LYPD8Q6UX82 237 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 COMMD1Q8N668 190 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 GPR32P1Q8NGA4 272 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 CHAC2Q8WUX2 184 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 OR2A5Q96R48 311 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 DHRS9Q9BPW9 319 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 PLSCR3Q9NRY6 295 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 THYN1Q9P016 225 aa17.17■□□□□ 0.34
UPF1-201ENST00000262803 LRP3O75074 770 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 HRH1P35367 487 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 C9orf50Q5SZB4 431 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 GABRG3Q99928 467 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 AAMDCQ9H7C9 122 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 RAB27BO00194 218 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 SSSCA1O60232 199 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 FGF9P31371 208 aaPredicted RBP17.16■□□□□ 0.34
UPF1-201ENST00000262803 CDK5Q00535 292 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 OR4C16Q8NGL9 310 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 MOB3AQ96BX8 217 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 ALG14Q96F25 216 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 TRMT61AQ96FX7 289 aaKnown RBP17.16■□□□□ 0.34
UPF1-201ENST00000262803 OR51I2Q9H344 312 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 IGHV1OR21-1A0A087WYE8 117 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 A0A0B4J2E0 115 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 A0A1B0GX12 115 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 PDGFBP01127 241 aaPredicted RBP17.16■□□□□ 0.34
UPF1-201ENST00000262803 ZBTB25P24278 435 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 GALNSP34059 522 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 MMP15P51511 669 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 NKX6-2Q9C056 277 aaPredicted RBP17.16■□□□□ 0.34
UPF1-201ENST00000262803 MBTPS2O43462 519 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 OR7C2O60412 319 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 SSX9Q7RTT3 188 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 RTN4IP1Q8WWV3 396 aaPredicted RBP17.16■□□□□ 0.34
UPF1-201ENST00000262803 C14orf79Q96F83 325 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 NEURL2Q9BR09 285 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 SIGLEC7Q9Y286 467 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 TRAPPC4Q9Y296 219 aa17.16■□□□□ 0.34
UPF1-201ENST00000262803 SPP1P10451 314 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 ZNF787Q6DD87 383 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 RELL2Q8NC24 303 aaPredicted RBP17.15■□□□□ 0.34
UPF1-201ENST00000262803 MARCH1Q8TCQ1 289 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 C20orf24Q9BUV8 137 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 NUP214P35658 2090 aaPredicted RBP17.15■□□□□ 0.34
UPF1-201ENST00000262803 UCNP55089 124 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 CDH26Q8IXH8 852 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 FBXW5Q969U6 566 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 ZNF764Q96H86 408 aaPredicted RBP17.15■□□□□ 0.34
UPF1-201ENST00000262803 ADTRPQ96IZ2 230 aa17.15■□□□□ 0.34
UPF1-201ENST00000262803 SIPA1L3O60292 1781 aaPredicted RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms