RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PRSS35Q8N3Z0 413 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 NKX3-1Q99801 234 aaPredicted RBP10.16□□□□□ -0.78
VPS4A-201ENST00000254950 EGLN1Q9GZT9 426 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 RAB9BQ9NP90 201 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 UFSP2Q9NUQ7 469 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 TMEM100Q9NV29 134 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 LIPGQ9Y5X9 500 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 BOLA2-SMG1P6H3BVE0 249 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 ZNF16P17020 682 aaPredicted RBP10.16□□□□□ -0.78
VPS4A-201ENST00000254950 GSK3AP49840 483 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 TAS2R31P59538 309 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 ABLIM2Q6H8Q1 611 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 FDX2Q6P4F2 183 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 MDP1Q86V88 176 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 BATF2Q8N1L9 274 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 SPERTQ8NA61 448 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 ST7LQ8TDW4 575 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 ADAMTS17Q8TE56 1095 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 SMIM4Q8WVI0 70 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 METTL17Q9H7H0 456 aaPredicted RBP10.16□□□□□ -0.78
VPS4A-201ENST00000254950 DLL3Q9NYJ7 618 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 CPN1P15169 458 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 PRKACAP17612 351 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 PTGFRP43088 359 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 TATDN3Q17R31 274 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 OR2W3Q7Z3T1 314 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 COQ8AQ8NI60 647 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 CLCC1Q96S66 551 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 SLC5A7Q9GZV3 580 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 RTTNQ86VV8 2226 aa10.16□□□□□ -0.78
VPS4A-201ENST00000254950 ATG2AQ2TAZ0 1938 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 TRBV5-5A0A0J9YX44 114 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 A0A0U1RQV5 110 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 CD300LBA8K4G0 201 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 HSPB6O14558 160 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 TK1P04183 234 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 GSTP1P09211 210 aaKnown RBP10.15□□□□□ -0.78
VPS4A-201ENST00000254950 KLK2P20151 261 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 FOXO1Q12778 655 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 PRDX4Q13162 271 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 BAK1Q16611 211 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 TMEM108Q6UXF1 575 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 Q6ZNX1 250 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 IDO2Q6ZQW0 420 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 OR10R2Q8NGX6 335 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 WDYHV1Q96HA8 205 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 CHD7Q9P2D1 2997 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 SULT1C2O00338 296 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 AGTR1P30556 359 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 PRSS12P56730 875 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 PAN3Q58A45 887 aaKnown RBP10.15□□□□□ -0.78
VPS4A-201ENST00000254950 AGAP6Q5VW22 663 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 PRR18Q8N4B5 295 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 CCDC71LQ8N9Z2 235 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 TRIM63Q969Q1 353 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 OR51J1Q9H342 316 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 IGHV3-64DA0A0J9YX35 117 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 FAM90A27PA6NNH2 459 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 DEGS1O15121 323 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 KNG1P01042 644 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 TCRBP04435 133 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 GAAP10253 952 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 HOXB1P14653 301 aaPredicted RBP10.15□□□□□ -0.78
VPS4A-201ENST00000254950 OXA1LQ15070 435 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 USB1Q9BQ65 265 aaKnown RBP10.15□□□□□ -0.78
VPS4A-201ENST00000254950 CNTD2Q9H8S5 307 aa10.15□□□□□ -0.78
VPS4A-201ENST00000254950 SPRY1O43609 319 aaPredicted RBP10.14□□□□□ -0.79
VPS4A-201ENST00000254950 PEX14O75381 377 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 CRHP06850 196 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 FAM87AP0C7U9 286 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 GNRHRP30968 328 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 SRP9P49458 86 aaKnown RBP10.14□□□□□ -0.79
VPS4A-201ENST00000254950 MMP15P51511 669 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 GPM6AP51674 278 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 FJX1Q86VR8 437 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 OSR2Q8N2R0 312 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 THAP6Q8TBB0 222 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 CA5BP1Q8WTZ4 195 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 IL1F10Q8WWZ1 152 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 DVL3Q92997 716 aaPredicted RBP10.14□□□□□ -0.79
VPS4A-201ENST00000254950 ADAT3Q96EY9 351 aaPredicted RBP10.14□□□□□ -0.79
VPS4A-201ENST00000254950 PLK3Q9H4B4 646 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 TRAPPC2LQ9UL33 140 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 ST3GAL6Q9Y274 331 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 RAXQ9Y2V3 346 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 MPC1Q9Y5U8 109 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 ZNF407Q9C0G0 2248 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 M0QYG6 137 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 ETV2O00321 342 aaPredicted RBP10.14□□□□□ -0.79
VPS4A-201ENST00000254950 ISG15P05161 165 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 CD34P28906 385 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 IL2RGP31785 369 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 DYRK1AQ13627 763 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 KCNMB1Q16558 191 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 BTLAQ7Z6A9 289 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 GGNQ86UU5 652 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 TMEM123Q8N131 208 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 NUDCD2Q8WVJ2 157 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 CMBLQ96DG6 245 aa10.14□□□□□ -0.79
VPS4A-201ENST00000254950 ADAT1Q9BUB4 502 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms