RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ABHD12BQ7Z5M8 362 aaPredicted RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 MRPL43Q8N983 215 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 LMF2Q9BU23 707 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 RAB18Q9NP72 206 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 G6PC2Q9NQR9 355 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 PARP11Q9NR21 331 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 MAFFQ9ULX9 164 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 POLR1DQ9Y2S0 133 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 R4GMQ9 66 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 C17orf105B2RV13 164 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 SHISA8B8ZZ34 492 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 ADAM10O14672 748 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 SOD3P08294 240 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 SNRPCP09234 159 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 G0S2P27469 103 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 RPL27P61353 136 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 ZFP62Q8NB50 900 aaPredicted RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 SUMF1Q8NBK3 374 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 POC1AQ8NBT0 407 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 OR1J1Q8NGS3 322 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 SSX3Q99909 188 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 POLE3Q9NRF9 147 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 MRPS28Q9Y2Q9 187 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 A0A087X0M5 115 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 A0A1B0GX30 115 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 MEGF11A6BM72 1044 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 PHOX2AO14813 284 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 ST8SIA5O15466 376 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 ZNF20P17024 532 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 TAS2R31P59538 309 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 SSX2Q16385 188 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 C16orf47Q6ZP98 133 aaPredicted RBP12.72□□□□□ -0.37
SDC1-201ENST00000254351 LRP11Q86VZ4 500 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 SUMF2Q8NBJ7 301 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 WFDC1Q9HC57 220 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 UBQLN4Q9NRR5 601 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 FAM212BQ9NTI7 297 aaPredicted RBP12.72□□□□□ -0.37
SDC1-201ENST00000254351 NUP210LQ5VU65 1888 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 PET100P0DJ07 73 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 TMEM50BP56557 158 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 RAB38P57729 211 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 KIR2DS3Q14952 304 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 ISXQ2M1V0 245 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 FNDC9Q8TBE3 224 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 THAP3Q8WTV1 239 aaPredicted RBP12.72□□□□□ -0.37
SDC1-201ENST00000254351 GNRHR2Q96P88 292 aa12.72□□□□□ -0.37
SDC1-201ENST00000254351 FAM221AA4D161 298 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 BTBD17A6NE02 478 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 C5orf67F2Z3F1 127 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 STARD6P59095 220 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 SHHQ15465 462 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 CLEC12BQ2HXU8 276 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 CARD17Q5XLA6 110 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 SLC22A24Q8N4F4 322 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 TMEM156Q8N614 296 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 OR51T1Q8NGJ9 327 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 LPAR5Q9H1C0 372 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 C19orf12Q9NSK7 152 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 IGKV1D-8A0A087WSZ0 117 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 IGLV1-36A0A0B4J1U3 117 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 H3BML4 177 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 MYOGP15173 224 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 CDAP32320 146 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 PTGER4P35408 488 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 SLC6A9P48067 706 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 EIF5AP63241 154 aaKnown RBP12.71□□□□□ -0.37
SDC1-201ENST00000254351 COL19A1Q14993 1142 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 CHRFAM7AQ494W8 412 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 TMEM268Q5VZI3 342 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 BATF2Q8N1L9 274 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 MISP3Q96FF7 219 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 THOC3Q96J01 351 aaKnown RBP12.71□□□□□ -0.37
SDC1-201ENST00000254351 PRRX2Q99811 253 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 TMEM59Q9BXS4 323 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 PRDM13Q9H4Q3 707 aa12.71□□□□□ -0.37
SDC1-201ENST00000254351 RRADP55042 308 aa12.71□□□□□ -0.38
SDC1-201ENST00000254351 PHLDA2Q53GA4 152 aa12.71□□□□□ -0.38
SDC1-201ENST00000254351 AADACL3Q5VUY0 350 aa12.71□□□□□ -0.38
SDC1-201ENST00000254351 FAHD2BQ6P2I3 314 aaPredicted RBP12.71□□□□□ -0.38
SDC1-201ENST00000254351 ZNF574Q6ZN55 896 aaPredicted RBP12.71□□□□□ -0.38
SDC1-201ENST00000254351 BAHD1Q8TBE0 780 aaPredicted RBP12.71□□□□□ -0.38
SDC1-201ENST00000254351 SPPL3Q8TCT6 385 aa12.71□□□□□ -0.38
SDC1-201ENST00000254351 Q8WTZ3 238 aa12.71□□□□□ -0.38
SDC1-201ENST00000254351 FAHD2AQ96GK7 314 aa12.71□□□□□ -0.38
SDC1-201ENST00000254351 CHST5Q9GZS9 411 aa12.71□□□□□ -0.38
SDC1-201ENST00000254351 GPR89AB7ZAQ6 455 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 SOX15O60248 233 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 JTBO76095 146 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 GPR89BP0CG08 455 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 GABRR1P24046 479 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 GPR3P46089 330 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 CDX1P47902 265 aaPredicted RBP12.7□□□□□ -0.38
SDC1-201ENST00000254351 UBE2KP61086 200 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 POU3F1Q03052 451 aaPredicted RBP12.7□□□□□ -0.38
SDC1-201ENST00000254351 CHAF1BQ13112 559 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 KHDC3LQ587J8 217 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 MAMDC2Q7Z304 686 aaPredicted RBP12.7□□□□□ -0.38
SDC1-201ENST00000254351 C1QL2Q7Z5L3 287 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 ADAMTS18Q8TE60 1221 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 GTF3AQ92664 365 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms