RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GUCA2AQ02747 115 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 CAPSQ13938 189 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 EXT1Q16394 746 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 IAH1Q2TAA2 248 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 PARS2Q7L3T8 475 aaKnown RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 RTN4RL1Q86UN2 441 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 NXPE1Q8N323 547 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM239Q8WW34 195 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 TRIB3Q96RU7 358 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SPXQ9BT56 116 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 DERL1Q9BUN8 251 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 HCFC1R1Q9NWW0 138 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 COLQQ9Y215 455 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 Q9Y3F1 56 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 DOCK2Q92608 1830 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 TAF1P21675 1872 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 A0A1B0GTI1 187 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SMIM35A0A1B0GVV1 85 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 GAGE12BA1L429 117 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 TNFSF12O43508 249 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 HCRTR1O43613 425 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 HLA-HP01893 362 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 IRF1P10914 325 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 KCNE1P15382 129 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 KLK2P20151 261 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 VIPR2P41587 438 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ENTPD8Q5MY95 495 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 COX20Q5RI15 118 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF770Q6IQ21 691 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 PWWP2BQ6NUJ5 590 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 FBXW12Q6X9E4 464 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 OR2T10Q8NGZ9 312 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SUN3Q8TAQ9 357 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 RAB8BQ92930 207 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SMIM19Q96E16 107 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 LINC00597Q9H2U6 94 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 MTHFD2LQ9H903 347 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 BPIFA1Q9NP55 256 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 RAB18Q9NP72 206 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SERTAD3Q9UJW9 196 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 YBX2Q9Y2T7 364 aaKnown RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 GON4LQ3T8J9 2241 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 TRIP11Q15643 1979 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 IGHV2OR16-5A0A0B4J2B6 119 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 EDDM13A0A1B0GTR0 161 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 FAM221AA4D161 298 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 LRP5LA4QPB2 252 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 TLX3O43711 291 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 LIPFP07098 398 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 FOLR1P15328 257 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 GZMHP20718 246 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 NOVP48745 357 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 BTG2P78543 158 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 RAB32Q13637 225 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 DOC2BQ14184 412 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 LTC4SQ16873 150 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 PLEKHS1Q5SXH7 462 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF776Q68DI1 518 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 SLC25A42Q86VD7 318 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 NR2C2APQ86WQ0 139 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM123Q8N131 208 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 CLDN19Q8N6F1 224 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZSCAN4Q8NAM6 433 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 NEIL2Q969S2 332 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 CTHRC1Q96CG8 243 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF587Q96SQ5 575 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 RAB11FIP5Q9BXF6 653 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 ZDHHC3Q9NYG2 299 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 PEF1Q9UBV8 284 aaKnown RBP5.16□□□□□ -1.58
SCN1A-216ENST00000637968 NAT8Q9UHE5 227 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 WASHC3Q9Y3C0 194 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 LIPGQ9Y5X9 500 aa5.16□□□□□ -1.58
SCN1A-216ENST00000637968 NRXN3Q9Y4C0 1643 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 NPIPA5A0A0B4J1W7 369 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 FBLL1A6NHQ2 334 aaKnown RBP5.15□□□□□ -1.58
SCN1A-216ENST00000637968 E9PQ18 207 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 PGCP20142 388 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 DRD1P21728 446 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 RPS4Y1P22090 263 aaKnown RBP5.15□□□□□ -1.58
SCN1A-216ENST00000637968 ASCL1P50553 236 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 FOXL2P58012 376 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 TCTN3Q6NUS6 607 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 BIVMQ86UB2 503 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 SIRT6Q8N6T7 355 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 OR1N2Q8NGR9 330 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 OR6K6Q8NGW6 343 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 OR4S2Q8NH73 311 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 OR5AK2Q8NH90 309 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 SP7Q8TDD2 431 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF296Q8WUU4 475 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-216ENST00000637968 TM4SF18Q96CE8 201 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 ABHD6Q9BV23 337 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 HINT3Q9NQE9 182 aaKnown RBP5.15□□□□□ -1.58
SCN1A-216ENST00000637968 SLC17A5Q9NRA2 495 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM106BQ9NUM4 274 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 C19orf53Q9UNZ5 99 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-216ENST00000637968 OR51B2Q9Y5P1 312 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 MAST2Q6P0Q8 1798 aa5.15□□□□□ -1.58
SCN1A-216ENST00000637968 TRBV24-1A0A075B6N3 115 aa5.15□□□□□ -1.59
SCN1A-216ENST00000637968 TRAV26-1A0A087WT03 109 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms