RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 IL4I1Q96RQ9 567 aa11.53□□□□□ -0.56
PNKP-228ENST00000637325 SLC6A7Q99884 636 aa11.53□□□□□ -0.56
PNKP-228ENST00000637325 ABCB9Q9NP78 766 aa11.53□□□□□ -0.56
PNKP-228ENST00000637325 ERVK-18Q9QC07 812 aa11.53□□□□□ -0.56
PNKP-228ENST00000637325 ZNF391Q9UJN7 358 aa11.53□□□□□ -0.56
PNKP-228ENST00000637325 MPC1Q9Y5U8 109 aa11.53□□□□□ -0.56
PNKP-228ENST00000637325 IGHV2-70DA0A0C4DH43 119 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 TMEM269A0A1B0GVZ9 245 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 ACOD1A6NK06 481 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 SAC3D1A6NKF1 404 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 SLC22A31A6NKX4 558 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 TRIM77I1YAP6 450 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 PHYHO14832 338 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 ADAM20O43506 726 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 NDUFA2O43678 99 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 ZNF254O75437 659 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 EPHA2P29317 976 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 NPY4RP50391 375 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 RIDAP52758 137 aaKnown RBP11.52□□□□□ -0.57
PNKP-228ENST00000637325 ACTR3P61158 418 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 HOXA4Q00056 320 aaPredicted RBP11.52□□□□□ -0.57
PNKP-228ENST00000637325 PAX8Q06710 450 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 PRDX4Q13162 271 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 ZNF829Q3KNS6 432 aaPredicted RBP11.52□□□□□ -0.57
PNKP-228ENST00000637325 NXNL2Q5VZ03 156 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 WDR25Q64LD2 544 aaPredicted RBP11.52□□□□□ -0.57
PNKP-228ENST00000637325 C12orf73Q69YU5 71 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 RBMS3Q6XE24 437 aaKnown RBP11.52□□□□□ -0.57
PNKP-228ENST00000637325 KCTD8Q6ZWB6 473 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 USP43Q70EL4 1123 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 BCDIN3DQ7Z5W3 292 aaKnown RBP11.52□□□□□ -0.57
PNKP-228ENST00000637325 GID4Q8IVV7 300 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 ZNF679Q8IYX0 411 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 OR1M1Q8NGA1 313 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 LRRC29Q8WV35 223 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 PYDC1Q8WXC3 89 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 C22orf15Q8WYQ4 148 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 HIST1H2AAQ96QV6 131 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 OR8B4Q96RC9 309 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 CIB1Q99828 191 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 NUDT16L1Q9BRJ7 211 aaKnown RBP11.52□□□□□ -0.57
PNKP-228ENST00000637325 RTL8AQ9BWD3 113 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 TTTY10Q9BZA0 68 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 RIBC2Q9H4K1 309 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 NUP50Q9UKX7 468 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 OAZ3Q9UMX2 235 aa11.52□□□□□ -0.57
PNKP-228ENST00000637325 ZNF850A8MQ14 1090 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 ZNF670-ZNF695F2Z2N8 137 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 CST4P01036 141 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 FSHBP01225 129 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 GYPAP02724 150 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 PSMB10P40306 273 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 MAP2K3P46734 347 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 HILS1P60008 231 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 CD276Q5ZPR3 534 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 ASRGL1Q7L266 308 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 SLC35F2Q8IXU6 374 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 GALNT4Q8N4A0 578 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 GCSAMQ8N6F7 178 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 SEMA6DQ8NFY4 1073 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 ZFAND2BQ8WV99 257 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 LYZL4Q96KX0 146 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 MNTQ99583 582 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 RBM4BQ9BQ04 359 aaKnown RBP11.51□□□□□ -0.57
PNKP-228ENST00000637325 PBOV1Q9GZY1 135 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 PPP1R3EQ9H7J1 279 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 RNPEPL1Q9HAU8 725 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 GTF2A1LQ9UNN4 478 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 COPS3Q9UNS2 423 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 ORC6Q9Y5N6 252 aa11.51□□□□□ -0.57
PNKP-228ENST00000637325 IGHV3OR15-7A0A075B7D8 119 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 KIR2DS1A0A191URI9 304 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 TMEM210A6NLX4 147 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 CDIPTO14735 213 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 LHBP01229 141 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 EGR1P18146 543 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 ACKR3P25106 362 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 DCTDP32321 178 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 CXCR4P61073 352 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 CSNK2BP67870 215 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 EFNB1P98172 346 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 ROM1Q03395 351 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 POU4F2Q12837 409 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 MICBQ29980 383 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 AADACL4Q5VUY2 407 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 ZNF322Q6U7Q0 402 aaPredicted RBP11.5□□□□□ -0.57
PNKP-228ENST00000637325 THAP5Q7Z6K1 395 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 WDR86Q86TI4 376 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 C11orf53Q8IXP5 236 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 ZDHHC23Q8IYP9 409 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.5□□□□□ -0.57
PNKP-228ENST00000637325 RNF170Q96K19 258 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 PKP2Q99959 881 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 OSBPL10Q9BXB5 764 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 MS4A7Q9GZW8 240 aaPredicted RBP11.5□□□□□ -0.57
PNKP-228ENST00000637325 FAM206AQ9NX38 181 aa11.5□□□□□ -0.57
PNKP-228ENST00000637325 WARS2Q9UGM6 360 aaKnown RBP11.5□□□□□ -0.57
PNKP-228ENST00000637325 A0A0U1RQV5 110 aa11.49□□□□□ -0.57
PNKP-228ENST00000637325 ZNF816-ZNF321PA0A0X1KG74 233 aa11.49□□□□□ -0.57
PNKP-228ENST00000637325 ENSAO43768 121 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms