RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 OR2AE1Q8NHA4 323 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 OR1F12Q8NHA8 337 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 AQP3Q92482 292 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 NICN1Q9BSH3 213 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 HEXA-AS1Q9H8Q6 139 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 SCPEP1Q9HB40 452 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 KLF13Q9Y2Y9 288 aaPredicted RBP13.69□□□□□ -0.22
CLN3-251ENST00000636853 V9GYS6 101 aa13.69□□□□□ -0.22
CLN3-251ENST00000636853 A0A1W2PP11 408 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 M0QYG6 137 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 PRAF2O60831 178 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 ANXA3P12429 323 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 PRSS12P56730 875 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 PPIAP62937 165 aaKnown RBP13.68□□□□□ -0.22
CLN3-251ENST00000636853 PSG4Q00888 419 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 SSBP1Q04837 148 aaKnown RBP13.68□□□□□ -0.22
CLN3-251ENST00000636853 UBE2V2Q15819 145 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 CDNFQ49AH0 187 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 RIPPLY2Q5TAB7 128 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 METTL11BQ5VVY1 283 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 RAB12Q6IQ22 244 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 GLDNQ6ZMI3 551 aaPredicted RBP13.68□□□□□ -0.22
CLN3-251ENST00000636853 SKA3Q8IX90 412 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 OR5D18Q8NGL1 313 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 SGK3Q96BR1 496 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 C1orf147Q96MC9 270 aaPredicted RBP13.68□□□□□ -0.22
CLN3-251ENST00000636853 BANF2Q9H503 90 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 PIGLQ9Y2B2 252 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 ASPMQ8IZT6 3477 aa13.68□□□□□ -0.22
CLN3-251ENST00000636853 MRPL33O75394 65 aaKnown RBP13.67□□□□□ -0.22
CLN3-251ENST00000636853 MPIG6BO95866 241 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 IFNA7P01567 189 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 APOC1P02654 83 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 GNB3P16520 340 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 CTRB1P17538 263 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 TAS2R19P59542 299 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 SCRN3Q0VDG4 424 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 ECH1Q13011 328 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 CTRB2Q6GPI1 263 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 SLC16A14Q7RTX9 510 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.67□□□□□ -0.22
CLN3-251ENST00000636853 FJX1Q86VR8 437 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 TUSC5Q8IXB3 177 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 MEIOBQ8N635 442 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 TMEM229BQ8NBD8 167 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 FNDC9Q8TBE3 224 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 TINAGL1Q9GZM7 467 aaPredicted RBP13.67□□□□□ -0.22
CLN3-251ENST00000636853 OR10A2Q9H208 303 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 CALHM2Q9HA72 323 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 IGKV3D-15A0A087WSY6 115 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 A0A0A6YYD4 124 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 CDRT15L2A8MXV6 281 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 RAB3DO95716 219 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 CYB5AP00167 134 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 RLN1P04808 185 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 THBS4P35443 961 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 HTR5AP47898 357 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 GRK1Q15835 563 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 C9orf135Q5VTT2 229 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 DRAM2Q6UX65 266 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 OR4S1Q8NGB4 309 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 OR52B4Q8NGK2 314 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 SSC4DQ8WTU2 575 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 NUDCD2Q8WVJ2 157 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 TMEM45BQ96B21 275 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 SELENOIQ9C0D9 397 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 LPAR5Q9H1C0 372 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 SLCO5A1Q9H2Y9 848 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 SLC7A10Q9NS82 523 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 ZNF69Q9UC07 566 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 MGAT4AQ9UM21 535 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 LIPGQ9Y5X9 500 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 LOC400499M0QZD8 3231 aa13.67□□□□□ -0.22
CLN3-251ENST00000636853 MEIKINA0A087WXM9 373 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 KLRC4-KLRK1H3BQV0 150 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 SYNGR4O95473 234 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 VSIG10L2P0DP72 767 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 KISS1Q15726 138 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 CRIP3Q6Q6R5 217 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 CHMP1BQ7LBR1 199 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 TRAPPC6BQ86SZ2 158 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 GVQW1Q8N7I0 195 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 OR52H1Q8NGJ2 320 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 CYYR1Q96J86 154 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 AIFM2Q9BRQ8 373 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 PRRG4Q9BZD6 226 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 OR2H1Q9GZK4 316 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 WNT5BQ9H1J7 359 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 ZNF224Q9NZL3 707 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 EMC3Q9P0I2 261 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 FBLN5Q9UBX5 448 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 DMXL1Q9Y485 3027 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 RPS10-NUDT3A0A1W2PQS6 291 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 OR6C6A6NF89 314 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 NKX2-8O15522 239 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 CDC14BO60729 498 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 SNAPC5O75971 98 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 LCATP04180 440 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 CD46P15529 392 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 ARG2P78540 354 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms